Strain Fitness in Escherichia coli BL21 around ECD_03532

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03531 and ECD_03532 are separated by 156 nucleotidesECD_03532 and ECD_03533 are separated by 64 nucleotidesECD_03533 and ECD_03534 are separated by 42 nucleotidesECD_03534 and ECD_03535 are separated by 26 nucleotidesECD_03535 and ECD_03536 overlap by 44 nucleotides ECD_03531: ECD_03531 - hypothetical protein, at 3,716,676 to 3,720,173 _03531 ECD_03532: ECD_03532 - hypothetical protein, at 3,720,330 to 3,720,743 _03532 ECD_03533: ECD_03533 - hypothetical protein, at 3,720,808 to 3,720,990 _03533 ECD_03534: ECD_03534 - hypothetical protein, at 3,721,033 to 3,721,179 _03534 ECD_03535: ECD_03535 - putative IS protein, at 3,721,206 to 3,721,562 _03535 ECD_03536: ECD_03536 - IS30 transposase, at 3,721,519 to 3,722,643 _03536 Position (kb) 3720 3721Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3719.334 kb on + strand, within ECD_03531at 3719.335 kb on - strand, within ECD_03531at 3719.335 kb on - strand, within ECD_03531at 3719.335 kb on - strand, within ECD_03531at 3719.336 kb on + strand, within ECD_03531at 3719.373 kb on - strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.400 kb on + strand, within ECD_03531at 3719.401 kb on - strand, within ECD_03531at 3719.401 kb on - strand, within ECD_03531at 3719.423 kb on + strand, within ECD_03531at 3719.424 kb on - strand, within ECD_03531at 3719.424 kb on - strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.425 kb on + strand, within ECD_03531at 3719.426 kb on - strand, within ECD_03531at 3719.463 kb on - strand, within ECD_03531at 3719.463 kb on - strand, within ECD_03531at 3719.469 kb on - strand, within ECD_03531at 3719.492 kb on + strand, within ECD_03531at 3719.492 kb on + strand, within ECD_03531at 3719.495 kb on + strand, within ECD_03531at 3719.495 kb on + strand, within ECD_03531at 3719.501 kb on + strand, within ECD_03531at 3719.550 kb on + strand, within ECD_03531at 3719.566 kb on - strand, within ECD_03531at 3719.577 kb on + strand, within ECD_03531at 3719.577 kb on + strand, within ECD_03531at 3719.607 kb on + strand, within ECD_03531at 3719.607 kb on + strand, within ECD_03531at 3719.608 kb on - strand, within ECD_03531at 3719.608 kb on - strand, within ECD_03531at 3719.608 kb on - strand, within ECD_03531at 3719.648 kb on + strand, within ECD_03531at 3719.648 kb on + strand, within ECD_03531at 3719.648 kb on + strand, within ECD_03531at 3719.650 kb on + strand, within ECD_03531at 3719.650 kb on + strand, within ECD_03531at 3719.751 kb on + strand, within ECD_03531at 3719.752 kb on - strand, within ECD_03531at 3719.824 kb on - strandat 3719.999 kb on + strandat 3720.137 kb on + strandat 3720.450 kb on + strand, within ECD_03532at 3720.450 kb on + strand, within ECD_03532at 3720.499 kb on + strand, within ECD_03532at 3720.500 kb on - strand, within ECD_03532at 3720.573 kb on + strand, within ECD_03532at 3721.061 kb on + strand, within ECD_03534at 3721.071 kb on + strand, within ECD_03534at 3721.113 kb on + strand, within ECD_03534at 3721.162 kb on + strand, within ECD_03534at 3721.341 kb on + strand, within ECD_03535at 3721.361 kb on + strand, within ECD_03535at 3721.364 kb on + strand, within ECD_03535at 3721.460 kb on - strand, within ECD_03535at 3721.565 kb on + strandat 3721.565 kb on + strandat 3721.635 kb on + strand, within ECD_03536at 3721.636 kb on - strand, within ECD_03536at 3721.658 kb on + strand, within ECD_03536at 3721.685 kb on + strand, within ECD_03536

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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3,719,334 + ECD_03531 0.76 +0.1
3,719,335 - ECD_03531 0.76 -1.1
3,719,335 - ECD_03531 0.76 -2.2
3,719,335 - ECD_03531 0.76 -1.9
3,719,336 + ECD_03531 0.76 +0.2
3,719,373 - ECD_03531 0.77 -0.7
3,719,400 + ECD_03531 0.78 +0.1
3,719,400 + ECD_03531 0.78 -0.2
3,719,400 + ECD_03531 0.78 -0.9
3,719,400 + ECD_03531 0.78 -0.5
3,719,400 + ECD_03531 0.78 +1.1
3,719,400 + ECD_03531 0.78 +0.5
3,719,401 - ECD_03531 0.78 +0.2
3,719,401 - ECD_03531 0.78 -1.6
3,719,423 + ECD_03531 0.79 -2.1
3,719,424 - ECD_03531 0.79 -0.0
3,719,424 - ECD_03531 0.79 -0.9
3,719,425 + ECD_03531 0.79 +0.2
3,719,425 + ECD_03531 0.79 -0.3
3,719,425 + ECD_03531 0.79 -0.5
3,719,425 + ECD_03531 0.79 -0.5
3,719,425 + ECD_03531 0.79 +0.2
3,719,425 + ECD_03531 0.79 +1.3
3,719,425 + ECD_03531 0.79 +0.2
3,719,425 + ECD_03531 0.79 -0.5
3,719,425 + ECD_03531 0.79 -0.4
3,719,425 + ECD_03531 0.79 -0.7
3,719,426 - ECD_03531 0.79 -1.0
3,719,463 - ECD_03531 0.80 -0.1
3,719,463 - ECD_03531 0.80 -1.4
3,719,469 - ECD_03531 0.80 -1.8
3,719,492 + ECD_03531 0.81 -0.1
3,719,492 + ECD_03531 0.81 -0.0
3,719,495 + ECD_03531 0.81 -0.5
3,719,495 + ECD_03531 0.81 -0.3
3,719,501 + ECD_03531 0.81 -0.3
3,719,550 + ECD_03531 0.82 -0.6
3,719,566 - ECD_03531 0.83 -0.9
3,719,577 + ECD_03531 0.83 -0.7
3,719,577 + ECD_03531 0.83 +0.3
3,719,607 + ECD_03531 0.84 +2.1
3,719,607 + ECD_03531 0.84 +0.2
3,719,608 - ECD_03531 0.84 -0.0
3,719,608 - ECD_03531 0.84 -0.9
3,719,608 - ECD_03531 0.84 -0.3
3,719,648 + ECD_03531 0.85 -0.3
3,719,648 + ECD_03531 0.85 +0.7
3,719,648 + ECD_03531 0.85 -1.1
3,719,650 + ECD_03531 0.85 -1.0
3,719,650 + ECD_03531 0.85 -1.4
3,719,751 + ECD_03531 0.88 -0.7
3,719,752 - ECD_03531 0.88 -2.9
3,719,824 - -1.5
3,719,999 + -0.6
3,720,137 + -0.4
3,720,450 + ECD_03532 0.29 -1.8
3,720,450 + ECD_03532 0.29 -0.9
3,720,499 + ECD_03532 0.41 -1.2
3,720,500 - ECD_03532 0.41 -1.6
3,720,573 + ECD_03532 0.59 -1.1
3,721,061 + ECD_03534 0.19 -2.1
3,721,071 + ECD_03534 0.26 -0.2
3,721,113 + ECD_03534 0.54 -0.4
3,721,162 + ECD_03534 0.88 -0.2
3,721,341 + ECD_03535 0.38 +0.1
3,721,361 + ECD_03535 0.43 +0.1
3,721,364 + ECD_03535 0.44 -1.5
3,721,460 - ECD_03535 0.71 -0.4
3,721,565 + +0.2
3,721,565 + -0.3
3,721,635 + ECD_03536 0.10 -0.3
3,721,636 - ECD_03536 0.10 -1.1
3,721,658 + ECD_03536 0.12 -0.4
3,721,685 + ECD_03536 0.15 -0.2

Or see this region's nucleotide sequence