Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03531 and ECD_03532 are separated by 156 nucleotides ECD_03532 and ECD_03533 are separated by 64 nucleotides ECD_03533 and ECD_03534 are separated by 42 nucleotides ECD_03534 and ECD_03535 are separated by 26 nucleotides ECD_03535 and ECD_03536 overlap by 44 nucleotides
ECD_03531: ECD_03531 - hypothetical protein, at 3,716,676 to 3,720,173
_03531
ECD_03532: ECD_03532 - hypothetical protein, at 3,720,330 to 3,720,743
_03532
ECD_03533: ECD_03533 - hypothetical protein, at 3,720,808 to 3,720,990
_03533
ECD_03534: ECD_03534 - hypothetical protein, at 3,721,033 to 3,721,179
_03534
ECD_03535: ECD_03535 - putative IS protein, at 3,721,206 to 3,721,562
_03535
ECD_03536: ECD_03536 - IS30 transposase, at 3,721,519 to 3,722,643
_03536
Position (kb)
3720
3721 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3719.334 kb on + strand, within ECD_03531 at 3719.335 kb on - strand, within ECD_03531 at 3719.335 kb on - strand, within ECD_03531 at 3719.335 kb on - strand, within ECD_03531 at 3719.336 kb on + strand, within ECD_03531 at 3719.373 kb on - strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.400 kb on + strand, within ECD_03531 at 3719.401 kb on - strand, within ECD_03531 at 3719.401 kb on - strand, within ECD_03531 at 3719.423 kb on + strand, within ECD_03531 at 3719.424 kb on - strand, within ECD_03531 at 3719.424 kb on - strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.425 kb on + strand, within ECD_03531 at 3719.426 kb on - strand, within ECD_03531 at 3719.463 kb on - strand, within ECD_03531 at 3719.463 kb on - strand, within ECD_03531 at 3719.469 kb on - strand, within ECD_03531 at 3719.492 kb on + strand, within ECD_03531 at 3719.492 kb on + strand, within ECD_03531 at 3719.495 kb on + strand, within ECD_03531 at 3719.495 kb on + strand, within ECD_03531 at 3719.501 kb on + strand, within ECD_03531 at 3719.550 kb on + strand, within ECD_03531 at 3719.566 kb on - strand, within ECD_03531 at 3719.577 kb on + strand, within ECD_03531 at 3719.577 kb on + strand, within ECD_03531 at 3719.607 kb on + strand, within ECD_03531 at 3719.607 kb on + strand, within ECD_03531 at 3719.608 kb on - strand, within ECD_03531 at 3719.608 kb on - strand, within ECD_03531 at 3719.608 kb on - strand, within ECD_03531 at 3719.648 kb on + strand, within ECD_03531 at 3719.648 kb on + strand, within ECD_03531 at 3719.648 kb on + strand, within ECD_03531 at 3719.650 kb on + strand, within ECD_03531 at 3719.650 kb on + strand, within ECD_03531 at 3719.751 kb on + strand, within ECD_03531 at 3719.752 kb on - strand, within ECD_03531 at 3719.824 kb on - strand at 3719.999 kb on + strand at 3720.137 kb on + strand at 3720.450 kb on + strand, within ECD_03532 at 3720.450 kb on + strand, within ECD_03532 at 3720.499 kb on + strand, within ECD_03532 at 3720.500 kb on - strand, within ECD_03532 at 3720.573 kb on + strand, within ECD_03532 at 3721.061 kb on + strand, within ECD_03534 at 3721.071 kb on + strand, within ECD_03534 at 3721.113 kb on + strand, within ECD_03534 at 3721.162 kb on + strand, within ECD_03534 at 3721.341 kb on + strand, within ECD_03535 at 3721.361 kb on + strand, within ECD_03535 at 3721.364 kb on + strand, within ECD_03535 at 3721.460 kb on - strand, within ECD_03535 at 3721.565 kb on + strand at 3721.565 kb on + strand at 3721.635 kb on + strand, within ECD_03536 at 3721.636 kb on - strand, within ECD_03536 at 3721.658 kb on + strand, within ECD_03536 at 3721.685 kb on + strand, within ECD_03536
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 3,719,334 + ECD_03531 0.76 +0.1 3,719,335 - ECD_03531 0.76 -1.1 3,719,335 - ECD_03531 0.76 -2.2 3,719,335 - ECD_03531 0.76 -1.9 3,719,336 + ECD_03531 0.76 +0.2 3,719,373 - ECD_03531 0.77 -0.7 3,719,400 + ECD_03531 0.78 +0.1 3,719,400 + ECD_03531 0.78 -0.2 3,719,400 + ECD_03531 0.78 -0.9 3,719,400 + ECD_03531 0.78 -0.5 3,719,400 + ECD_03531 0.78 +1.1 3,719,400 + ECD_03531 0.78 +0.5 3,719,401 - ECD_03531 0.78 +0.2 3,719,401 - ECD_03531 0.78 -1.6 3,719,423 + ECD_03531 0.79 -2.1 3,719,424 - ECD_03531 0.79 -0.0 3,719,424 - ECD_03531 0.79 -0.9 3,719,425 + ECD_03531 0.79 +0.2 3,719,425 + ECD_03531 0.79 -0.3 3,719,425 + ECD_03531 0.79 -0.5 3,719,425 + ECD_03531 0.79 -0.5 3,719,425 + ECD_03531 0.79 +0.2 3,719,425 + ECD_03531 0.79 +1.3 3,719,425 + ECD_03531 0.79 +0.2 3,719,425 + ECD_03531 0.79 -0.5 3,719,425 + ECD_03531 0.79 -0.4 3,719,425 + ECD_03531 0.79 -0.7 3,719,426 - ECD_03531 0.79 -1.0 3,719,463 - ECD_03531 0.80 -0.1 3,719,463 - ECD_03531 0.80 -1.4 3,719,469 - ECD_03531 0.80 -1.8 3,719,492 + ECD_03531 0.81 -0.1 3,719,492 + ECD_03531 0.81 -0.0 3,719,495 + ECD_03531 0.81 -0.5 3,719,495 + ECD_03531 0.81 -0.3 3,719,501 + ECD_03531 0.81 -0.3 3,719,550 + ECD_03531 0.82 -0.6 3,719,566 - ECD_03531 0.83 -0.9 3,719,577 + ECD_03531 0.83 -0.7 3,719,577 + ECD_03531 0.83 +0.3 3,719,607 + ECD_03531 0.84 +2.1 3,719,607 + ECD_03531 0.84 +0.2 3,719,608 - ECD_03531 0.84 -0.0 3,719,608 - ECD_03531 0.84 -0.9 3,719,608 - ECD_03531 0.84 -0.3 3,719,648 + ECD_03531 0.85 -0.3 3,719,648 + ECD_03531 0.85 +0.7 3,719,648 + ECD_03531 0.85 -1.1 3,719,650 + ECD_03531 0.85 -1.0 3,719,650 + ECD_03531 0.85 -1.4 3,719,751 + ECD_03531 0.88 -0.7 3,719,752 - ECD_03531 0.88 -2.9 3,719,824 - -1.5 3,719,999 + -0.6 3,720,137 + -0.4 3,720,450 + ECD_03532 0.29 -1.8 3,720,450 + ECD_03532 0.29 -0.9 3,720,499 + ECD_03532 0.41 -1.2 3,720,500 - ECD_03532 0.41 -1.6 3,720,573 + ECD_03532 0.59 -1.1 3,721,061 + ECD_03534 0.19 -2.1 3,721,071 + ECD_03534 0.26 -0.2 3,721,113 + ECD_03534 0.54 -0.4 3,721,162 + ECD_03534 0.88 -0.2 3,721,341 + ECD_03535 0.38 +0.1 3,721,361 + ECD_03535 0.43 +0.1 3,721,364 + ECD_03535 0.44 -1.5 3,721,460 - ECD_03535 0.71 -0.4 3,721,565 + +0.2 3,721,565 + -0.3 3,721,635 + ECD_03536 0.10 -0.3 3,721,636 - ECD_03536 0.10 -1.1 3,721,658 + ECD_03536 0.12 -0.4 3,721,685 + ECD_03536 0.15 -0.2
Or see this region's nucleotide sequence