Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03227 and ECD_03228 overlap by 82 nucleotides ECD_03228 and ECD_03229 are separated by 539 nucleotides
ECD_03227: ECD_03227 - IS1 protein InsB, at 3,365,173 to 3,365,676
_03227
ECD_03228: ECD_03228 - IS1 protein InsA, at 3,365,595 to 3,365,870
_03228
ECD_03229: ECD_03229 - inner membrane protein, at 3,366,410 to 3,367,714
_03229
Position (kb)
3365
3366 Strain fitness (log2 ratio)
-2
-1
0
1 at 3364.664 kb on - strand at 3364.684 kb on + strand at 3364.977 kb on - strand at 3365.031 kb on + strand at 3365.032 kb on - strand at 3365.104 kb on + strand at 3365.104 kb on + strand at 3365.104 kb on + strand at 3365.105 kb on - strand at 3365.105 kb on - strand at 3365.105 kb on - strand at 3365.105 kb on - strand at 3365.161 kb on - strand at 3365.895 kb on + strand at 3365.895 kb on + strand at 3365.947 kb on + strand at 3365.947 kb on + strand at 3365.947 kb on + strand at 3365.947 kb on + strand at 3365.947 kb on + strand at 3365.948 kb on - strand at 3365.948 kb on - strand at 3366.051 kb on - strand at 3366.053 kb on + strand at 3366.279 kb on + strand at 3366.279 kb on + strand at 3366.280 kb on - strand at 3366.280 kb on - strand at 3366.280 kb on - strand at 3366.294 kb on - strand at 3366.365 kb on + strand at 3366.398 kb on + strand at 3366.398 kb on + strand at 3366.399 kb on - strand at 3366.399 kb on - strand at 3366.412 kb on - strand at 3366.470 kb on + strand at 3366.532 kb on - strand at 3366.560 kb on - strand, within ECD_03229 at 3366.623 kb on - strand, within ECD_03229 at 3366.623 kb on - strand, within ECD_03229 at 3366.721 kb on + strand, within ECD_03229 at 3366.769 kb on - strand, within ECD_03229 at 3366.791 kb on - strand, within ECD_03229 at 3366.807 kb on + strand, within ECD_03229 at 3366.808 kb on - strand, within ECD_03229
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 3,364,664 - -2.2 3,364,684 + -1.4 3,364,977 - -0.0 3,365,031 + -1.5 3,365,032 - -0.1 3,365,104 + -0.4 3,365,104 + -0.7 3,365,104 + -0.4 3,365,105 - +1.3 3,365,105 - -0.2 3,365,105 - -0.2 3,365,105 - -0.3 3,365,161 - +0.2 3,365,895 + -0.8 3,365,895 + -0.7 3,365,947 + -0.5 3,365,947 + -0.4 3,365,947 + -0.3 3,365,947 + -0.3 3,365,947 + -0.3 3,365,948 - -1.2 3,365,948 - -0.5 3,366,051 - +0.9 3,366,053 + -0.1 3,366,279 + -1.6 3,366,279 + -1.3 3,366,280 - +0.8 3,366,280 - +0.4 3,366,280 - -0.2 3,366,294 - +1.5 3,366,365 + -0.4 3,366,398 + -1.4 3,366,398 + -0.3 3,366,399 - -0.1 3,366,399 - -0.4 3,366,412 - -0.0 3,366,470 + -0.5 3,366,532 - +0.1 3,366,560 - ECD_03229 0.11 -0.6 3,366,623 - ECD_03229 0.16 -0.1 3,366,623 - ECD_03229 0.16 +0.2 3,366,721 + ECD_03229 0.24 -2.0 3,366,769 - ECD_03229 0.28 -2.1 3,366,791 - ECD_03229 0.29 -0.2 3,366,807 + ECD_03229 0.30 -0.8 3,366,808 - ECD_03229 0.30 -0.3
Or see this region's nucleotide sequence