Strain Fitness in Escherichia coli BL21 around ECD_02984

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02983 and ECD_02984 are separated by 21 nucleotidesECD_02984 and ECD_02985 are separated by 98 nucleotides ECD_02983: ECD_02983 - L-threonine/L-serine transporter, at 3,129,985 to 3,131,316 _02983 ECD_02984: ECD_02984 - L-threonine dehydratase, catabolic, at 3,131,338 to 3,132,327 _02984 ECD_02985: ECD_02985 - tdc operon transcriptional activator, at 3,132,426 to 3,133,364 _02985 Position (kb) 3131 3132 3133Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3130.447 kb on - strand, within ECD_02983at 3130.447 kb on - strand, within ECD_02983at 3130.488 kb on + strand, within ECD_02983at 3130.501 kb on - strand, within ECD_02983at 3130.567 kb on - strand, within ECD_02983at 3130.567 kb on - strand, within ECD_02983at 3130.602 kb on - strand, within ECD_02983at 3130.614 kb on + strand, within ECD_02983at 3130.615 kb on - strand, within ECD_02983at 3130.813 kb on + strand, within ECD_02983at 3130.814 kb on - strand, within ECD_02983at 3130.821 kb on - strand, within ECD_02983at 3130.948 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3130.963 kb on - strand, within ECD_02983at 3131.006 kb on + strand, within ECD_02983at 3131.006 kb on + strand, within ECD_02983at 3131.007 kb on - strand, within ECD_02983at 3131.124 kb on - strand, within ECD_02983at 3131.124 kb on - strand, within ECD_02983at 3131.139 kb on - strand, within ECD_02983at 3131.139 kb on - strand, within ECD_02983at 3131.139 kb on - strand, within ECD_02983at 3131.239 kb on + strandat 3131.263 kb on - strandat 3131.294 kb on - strandat 3131.311 kb on - strandat 3131.322 kb on - strandat 3131.509 kb on + strand, within ECD_02984at 3131.654 kb on - strand, within ECD_02984at 3131.808 kb on - strand, within ECD_02984at 3132.139 kb on - strand, within ECD_02984at 3132.588 kb on - strand, within ECD_02985at 3132.728 kb on + strand, within ECD_02985at 3132.728 kb on + strand, within ECD_02985at 3132.731 kb on + strand, within ECD_02985at 3132.745 kb on + strand, within ECD_02985at 3132.748 kb on + strand, within ECD_02985at 3132.758 kb on + strand, within ECD_02985at 3132.876 kb on + strand, within ECD_02985at 3132.904 kb on - strand, within ECD_02985at 3132.973 kb on + strand, within ECD_02985at 3132.973 kb on + strand, within ECD_02985at 3132.974 kb on - strand, within ECD_02985at 3132.978 kb on - strand, within ECD_02985at 3132.978 kb on - strand, within ECD_02985at 3132.978 kb on - strand, within ECD_02985at 3133.032 kb on - strand, within ECD_02985at 3133.095 kb on - strand, within ECD_02985at 3133.177 kb on - strand, within ECD_02985

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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3,130,447 - ECD_02983 0.35 -0.1
3,130,447 - ECD_02983 0.35 -0.0
3,130,488 + ECD_02983 0.38 -0.2
3,130,501 - ECD_02983 0.39 +0.5
3,130,567 - ECD_02983 0.44 -0.9
3,130,567 - ECD_02983 0.44 -0.3
3,130,602 - ECD_02983 0.46 -0.4
3,130,614 + ECD_02983 0.47 +0.0
3,130,615 - ECD_02983 0.47 +0.6
3,130,813 + ECD_02983 0.62 -1.3
3,130,814 - ECD_02983 0.62 +0.5
3,130,821 - ECD_02983 0.63 -0.4
3,130,948 - ECD_02983 0.72 -0.2
3,130,963 - ECD_02983 0.73 -0.8
3,130,963 - ECD_02983 0.73 -0.7
3,130,963 - ECD_02983 0.73 -1.7
3,130,963 - ECD_02983 0.73 -1.0
3,130,963 - ECD_02983 0.73 +1.7
3,131,006 + ECD_02983 0.77 -1.0
3,131,006 + ECD_02983 0.77 -2.6
3,131,007 - ECD_02983 0.77 +0.5
3,131,124 - ECD_02983 0.86 -0.9
3,131,124 - ECD_02983 0.86 -0.5
3,131,139 - ECD_02983 0.87 +0.2
3,131,139 - ECD_02983 0.87 -0.1
3,131,139 - ECD_02983 0.87 +0.9
3,131,239 + -3.8
3,131,263 - +0.4
3,131,294 - -0.8
3,131,311 - -0.6
3,131,322 - +0.8
3,131,509 + ECD_02984 0.17 -0.7
3,131,654 - ECD_02984 0.32 -0.4
3,131,808 - ECD_02984 0.47 -0.4
3,132,139 - ECD_02984 0.81 -1.4
3,132,588 - ECD_02985 0.17 -1.6
3,132,728 + ECD_02985 0.32 -1.0
3,132,728 + ECD_02985 0.32 -1.5
3,132,731 + ECD_02985 0.32 -1.2
3,132,745 + ECD_02985 0.34 -1.8
3,132,748 + ECD_02985 0.34 -1.2
3,132,758 + ECD_02985 0.35 +0.4
3,132,876 + ECD_02985 0.48 -0.4
3,132,904 - ECD_02985 0.51 +0.4
3,132,973 + ECD_02985 0.58 -1.2
3,132,973 + ECD_02985 0.58 -2.0
3,132,974 - ECD_02985 0.58 +0.6
3,132,978 - ECD_02985 0.59 +0.1
3,132,978 - ECD_02985 0.59 -0.8
3,132,978 - ECD_02985 0.59 -0.4
3,133,032 - ECD_02985 0.65 -0.7
3,133,095 - ECD_02985 0.71 +0.7
3,133,177 - ECD_02985 0.80 -0.4

Or see this region's nucleotide sequence