Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02983 and ECD_02984 are separated by 21 nucleotides ECD_02984 and ECD_02985 are separated by 98 nucleotides
ECD_02983: ECD_02983 - L-threonine/L-serine transporter, at 3,129,985 to 3,131,316
_02983
ECD_02984: ECD_02984 - L-threonine dehydratase, catabolic, at 3,131,338 to 3,132,327
_02984
ECD_02985: ECD_02985 - tdc operon transcriptional activator, at 3,132,426 to 3,133,364
_02985
Position (kb)
3131
3132
3133 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3130.447 kb on - strand, within ECD_02983 at 3130.447 kb on - strand, within ECD_02983 at 3130.488 kb on + strand, within ECD_02983 at 3130.501 kb on - strand, within ECD_02983 at 3130.567 kb on - strand, within ECD_02983 at 3130.567 kb on - strand, within ECD_02983 at 3130.602 kb on - strand, within ECD_02983 at 3130.614 kb on + strand, within ECD_02983 at 3130.615 kb on - strand, within ECD_02983 at 3130.813 kb on + strand, within ECD_02983 at 3130.814 kb on - strand, within ECD_02983 at 3130.821 kb on - strand, within ECD_02983 at 3130.948 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3130.963 kb on - strand, within ECD_02983 at 3131.006 kb on + strand, within ECD_02983 at 3131.006 kb on + strand, within ECD_02983 at 3131.007 kb on - strand, within ECD_02983 at 3131.124 kb on - strand, within ECD_02983 at 3131.124 kb on - strand, within ECD_02983 at 3131.139 kb on - strand, within ECD_02983 at 3131.139 kb on - strand, within ECD_02983 at 3131.139 kb on - strand, within ECD_02983 at 3131.239 kb on + strand at 3131.263 kb on - strand at 3131.294 kb on - strand at 3131.311 kb on - strand at 3131.322 kb on - strand at 3131.509 kb on + strand, within ECD_02984 at 3131.654 kb on - strand, within ECD_02984 at 3131.808 kb on - strand, within ECD_02984 at 3132.139 kb on - strand, within ECD_02984 at 3132.588 kb on - strand, within ECD_02985 at 3132.728 kb on + strand, within ECD_02985 at 3132.728 kb on + strand, within ECD_02985 at 3132.731 kb on + strand, within ECD_02985 at 3132.745 kb on + strand, within ECD_02985 at 3132.748 kb on + strand, within ECD_02985 at 3132.758 kb on + strand, within ECD_02985 at 3132.876 kb on + strand, within ECD_02985 at 3132.904 kb on - strand, within ECD_02985 at 3132.973 kb on + strand, within ECD_02985 at 3132.973 kb on + strand, within ECD_02985 at 3132.974 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3132.978 kb on - strand, within ECD_02985 at 3133.032 kb on - strand, within ECD_02985 at 3133.095 kb on - strand, within ECD_02985 at 3133.177 kb on - strand, within ECD_02985
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 3,130,447 - ECD_02983 0.35 -0.1 3,130,447 - ECD_02983 0.35 -0.0 3,130,488 + ECD_02983 0.38 -0.2 3,130,501 - ECD_02983 0.39 +0.5 3,130,567 - ECD_02983 0.44 -0.9 3,130,567 - ECD_02983 0.44 -0.3 3,130,602 - ECD_02983 0.46 -0.4 3,130,614 + ECD_02983 0.47 +0.0 3,130,615 - ECD_02983 0.47 +0.6 3,130,813 + ECD_02983 0.62 -1.3 3,130,814 - ECD_02983 0.62 +0.5 3,130,821 - ECD_02983 0.63 -0.4 3,130,948 - ECD_02983 0.72 -0.2 3,130,963 - ECD_02983 0.73 -0.8 3,130,963 - ECD_02983 0.73 -0.7 3,130,963 - ECD_02983 0.73 -1.7 3,130,963 - ECD_02983 0.73 -1.0 3,130,963 - ECD_02983 0.73 +1.7 3,131,006 + ECD_02983 0.77 -1.0 3,131,006 + ECD_02983 0.77 -2.6 3,131,007 - ECD_02983 0.77 +0.5 3,131,124 - ECD_02983 0.86 -0.9 3,131,124 - ECD_02983 0.86 -0.5 3,131,139 - ECD_02983 0.87 +0.2 3,131,139 - ECD_02983 0.87 -0.1 3,131,139 - ECD_02983 0.87 +0.9 3,131,239 + -3.8 3,131,263 - +0.4 3,131,294 - -0.8 3,131,311 - -0.6 3,131,322 - +0.8 3,131,509 + ECD_02984 0.17 -0.7 3,131,654 - ECD_02984 0.32 -0.4 3,131,808 - ECD_02984 0.47 -0.4 3,132,139 - ECD_02984 0.81 -1.4 3,132,588 - ECD_02985 0.17 -1.6 3,132,728 + ECD_02985 0.32 -1.0 3,132,728 + ECD_02985 0.32 -1.5 3,132,731 + ECD_02985 0.32 -1.2 3,132,745 + ECD_02985 0.34 -1.8 3,132,748 + ECD_02985 0.34 -1.2 3,132,758 + ECD_02985 0.35 +0.4 3,132,876 + ECD_02985 0.48 -0.4 3,132,904 - ECD_02985 0.51 +0.4 3,132,973 + ECD_02985 0.58 -1.2 3,132,973 + ECD_02985 0.58 -2.0 3,132,974 - ECD_02985 0.58 +0.6 3,132,978 - ECD_02985 0.59 +0.1 3,132,978 - ECD_02985 0.59 -0.8 3,132,978 - ECD_02985 0.59 -0.4 3,133,032 - ECD_02985 0.65 -0.7 3,133,095 - ECD_02985 0.71 +0.7 3,133,177 - ECD_02985 0.80 -0.4
Or see this region's nucleotide sequence