Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02366 and ECD_02367 are separated by 14 nucleotides ECD_02367 and ECD_02368 are separated by 167 nucleotides
ECD_02366: ECD_02366 - elongator methionine tRNA (ac4C34) acetyltransferase, at 2,458,333 to 2,460,348
_02366
ECD_02367: ECD_02367 - putative neutral zinc metallopeptidase, at 2,460,363 to 2,461,226
_02367
ECD_02368: ECD_02368 - phosphoribosylaminoimidazole-succinocarboxamide synthetase, at 2,461,394 to 2,462,107
_02368
Position (kb)
2460
2461
2462 Strain fitness (log2 ratio)
-2
-1
0
1 at 2459.798 kb on - strand, within ECD_02366 at 2459.919 kb on + strand, within ECD_02366 at 2460.145 kb on + strand, within ECD_02366 at 2460.238 kb on - strand at 2460.238 kb on - strand at 2460.238 kb on - strand at 2460.244 kb on - strand at 2460.244 kb on - strand at 2460.471 kb on + strand, within ECD_02367 at 2460.578 kb on + strand, within ECD_02367 at 2460.578 kb on + strand, within ECD_02367 at 2460.578 kb on + strand, within ECD_02367 at 2460.579 kb on - strand, within ECD_02367 at 2460.579 kb on - strand, within ECD_02367 at 2460.581 kb on + strand, within ECD_02367 at 2460.581 kb on + strand, within ECD_02367 at 2460.582 kb on - strand, within ECD_02367 at 2460.634 kb on - strand, within ECD_02367 at 2460.634 kb on - strand, within ECD_02367 at 2460.696 kb on + strand, within ECD_02367 at 2460.790 kb on + strand, within ECD_02367 at 2460.790 kb on + strand, within ECD_02367 at 2460.790 kb on + strand, within ECD_02367 at 2460.791 kb on - strand, within ECD_02367 at 2460.890 kb on - strand, within ECD_02367 at 2460.890 kb on - strand, within ECD_02367 at 2460.914 kb on - strand, within ECD_02367 at 2461.079 kb on - strand, within ECD_02367 at 2461.108 kb on - strand, within ECD_02367 at 2461.231 kb on - strand at 2461.231 kb on - strand at 2461.231 kb on - strand at 2461.231 kb on - strand at 2461.241 kb on + strand at 2461.252 kb on + strand at 2461.253 kb on - strand at 2461.335 kb on + strand at 2461.335 kb on + strand at 2461.335 kb on + strand at 2461.407 kb on - strand at 2461.944 kb on + strand, within ECD_02368 at 2462.078 kb on - strand at 2462.085 kb on + strand at 2462.086 kb on - strand at 2462.131 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 2,459,798 - ECD_02366 0.73 -1.2 2,459,919 + ECD_02366 0.79 -2.1 2,460,145 + ECD_02366 0.90 +1.1 2,460,238 - -2.6 2,460,238 - -0.5 2,460,238 - -0.2 2,460,244 - -2.0 2,460,244 - +0.6 2,460,471 + ECD_02367 0.12 +0.7 2,460,578 + ECD_02367 0.25 -0.9 2,460,578 + ECD_02367 0.25 -1.2 2,460,578 + ECD_02367 0.25 -1.4 2,460,579 - ECD_02367 0.25 -0.7 2,460,579 - ECD_02367 0.25 -0.8 2,460,581 + ECD_02367 0.25 -2.2 2,460,581 + ECD_02367 0.25 +0.3 2,460,582 - ECD_02367 0.25 -0.9 2,460,634 - ECD_02367 0.31 +0.5 2,460,634 - ECD_02367 0.31 -0.2 2,460,696 + ECD_02367 0.39 +0.1 2,460,790 + ECD_02367 0.49 -1.0 2,460,790 + ECD_02367 0.49 -0.7 2,460,790 + ECD_02367 0.49 -0.7 2,460,791 - ECD_02367 0.50 -0.7 2,460,890 - ECD_02367 0.61 -0.8 2,460,890 - ECD_02367 0.61 -1.7 2,460,914 - ECD_02367 0.64 +0.1 2,461,079 - ECD_02367 0.83 -0.5 2,461,108 - ECD_02367 0.86 -0.1 2,461,231 - -0.5 2,461,231 - -1.3 2,461,231 - +0.3 2,461,231 - +0.1 2,461,241 + -1.1 2,461,252 + -0.3 2,461,253 - -0.4 2,461,335 + +0.4 2,461,335 + -0.6 2,461,335 + +0.1 2,461,407 - -1.9 2,461,944 + ECD_02368 0.77 -2.0 2,462,078 - +0.7 2,462,085 + -1.4 2,462,086 - -1.9 2,462,131 + -0.8
Or see this region's nucleotide sequence