Strain Fitness in Escherichia coli BL21 around ECD_02367

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02366 and ECD_02367 are separated by 14 nucleotidesECD_02367 and ECD_02368 are separated by 167 nucleotides ECD_02366: ECD_02366 - elongator methionine tRNA (ac4C34) acetyltransferase, at 2,458,333 to 2,460,348 _02366 ECD_02367: ECD_02367 - putative neutral zinc metallopeptidase, at 2,460,363 to 2,461,226 _02367 ECD_02368: ECD_02368 - phosphoribosylaminoimidazole-succinocarboxamide synthetase, at 2,461,394 to 2,462,107 _02368 Position (kb) 2460 2461 2462Strain fitness (log2 ratio) -2 -1 0 1at 2459.798 kb on - strand, within ECD_02366at 2459.919 kb on + strand, within ECD_02366at 2460.145 kb on + strand, within ECD_02366at 2460.238 kb on - strandat 2460.238 kb on - strandat 2460.238 kb on - strandat 2460.244 kb on - strandat 2460.244 kb on - strandat 2460.471 kb on + strand, within ECD_02367at 2460.578 kb on + strand, within ECD_02367at 2460.578 kb on + strand, within ECD_02367at 2460.578 kb on + strand, within ECD_02367at 2460.579 kb on - strand, within ECD_02367at 2460.579 kb on - strand, within ECD_02367at 2460.581 kb on + strand, within ECD_02367at 2460.581 kb on + strand, within ECD_02367at 2460.582 kb on - strand, within ECD_02367at 2460.634 kb on - strand, within ECD_02367at 2460.634 kb on - strand, within ECD_02367at 2460.696 kb on + strand, within ECD_02367at 2460.790 kb on + strand, within ECD_02367at 2460.790 kb on + strand, within ECD_02367at 2460.790 kb on + strand, within ECD_02367at 2460.791 kb on - strand, within ECD_02367at 2460.890 kb on - strand, within ECD_02367at 2460.890 kb on - strand, within ECD_02367at 2460.914 kb on - strand, within ECD_02367at 2461.079 kb on - strand, within ECD_02367at 2461.108 kb on - strand, within ECD_02367at 2461.231 kb on - strandat 2461.231 kb on - strandat 2461.231 kb on - strandat 2461.231 kb on - strandat 2461.241 kb on + strandat 2461.252 kb on + strandat 2461.253 kb on - strandat 2461.335 kb on + strandat 2461.335 kb on + strandat 2461.335 kb on + strandat 2461.407 kb on - strandat 2461.944 kb on + strand, within ECD_02368at 2462.078 kb on - strandat 2462.085 kb on + strandat 2462.086 kb on - strandat 2462.131 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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2,459,798 - ECD_02366 0.73 -1.2
2,459,919 + ECD_02366 0.79 -2.1
2,460,145 + ECD_02366 0.90 +1.1
2,460,238 - -2.6
2,460,238 - -0.5
2,460,238 - -0.2
2,460,244 - -2.0
2,460,244 - +0.6
2,460,471 + ECD_02367 0.12 +0.7
2,460,578 + ECD_02367 0.25 -0.9
2,460,578 + ECD_02367 0.25 -1.2
2,460,578 + ECD_02367 0.25 -1.4
2,460,579 - ECD_02367 0.25 -0.7
2,460,579 - ECD_02367 0.25 -0.8
2,460,581 + ECD_02367 0.25 -2.2
2,460,581 + ECD_02367 0.25 +0.3
2,460,582 - ECD_02367 0.25 -0.9
2,460,634 - ECD_02367 0.31 +0.5
2,460,634 - ECD_02367 0.31 -0.2
2,460,696 + ECD_02367 0.39 +0.1
2,460,790 + ECD_02367 0.49 -1.0
2,460,790 + ECD_02367 0.49 -0.7
2,460,790 + ECD_02367 0.49 -0.7
2,460,791 - ECD_02367 0.50 -0.7
2,460,890 - ECD_02367 0.61 -0.8
2,460,890 - ECD_02367 0.61 -1.7
2,460,914 - ECD_02367 0.64 +0.1
2,461,079 - ECD_02367 0.83 -0.5
2,461,108 - ECD_02367 0.86 -0.1
2,461,231 - -0.5
2,461,231 - -1.3
2,461,231 - +0.3
2,461,231 - +0.1
2,461,241 + -1.1
2,461,252 + -0.3
2,461,253 - -0.4
2,461,335 + +0.4
2,461,335 + -0.6
2,461,335 + +0.1
2,461,407 - -1.9
2,461,944 + ECD_02368 0.77 -2.0
2,462,078 - +0.7
2,462,085 + -1.4
2,462,086 - -1.9
2,462,131 + -0.8

Or see this region's nucleotide sequence