Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02288 and ECD_04338 are separated by 310 nucleotides ECD_04338 and ECD_02289 are separated by 64 nucleotides ECD_02289 and ECD_02290 are separated by 376 nucleotides
ECD_02288: ECD_02288 - palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase, at 2,373,530 to 2,374,450
_02288
ECD_04338: ECD_04338 - inner membrane protein, at 2,374,761 to 2,374,877
_04338
ECD_02289: ECD_02289 - glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase, at 2,374,942 to 2,376,180
_02289
ECD_02290: ECD_02290 - sensor kinase regulating yhjX; pyruvate-responsive YpdAB two-component system, at 2,376,557 to 2,378,254
_02290
Position (kb)
2374
2375
2376
2377 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2373.982 kb on + strand, within ECD_02288 at 2373.986 kb on + strand, within ECD_02288 at 2373.987 kb on - strand, within ECD_02288 at 2374.000 kb on + strand, within ECD_02288 at 2374.069 kb on + strand, within ECD_02288 at 2374.136 kb on + strand, within ECD_02288 at 2374.205 kb on + strand, within ECD_02288 at 2374.448 kb on + strand at 2374.448 kb on + strand at 2374.648 kb on + strand at 2374.719 kb on + strand at 2374.759 kb on + strand at 2374.760 kb on - strand at 2374.785 kb on - strand, within ECD_04338 at 2374.963 kb on - strand at 2374.963 kb on - strand at 2375.011 kb on - strand at 2375.169 kb on - strand, within ECD_02289 at 2375.255 kb on - strand, within ECD_02289 at 2375.274 kb on - strand, within ECD_02289 at 2375.376 kb on + strand, within ECD_02289 at 2375.416 kb on - strand, within ECD_02289 at 2375.503 kb on - strand, within ECD_02289 at 2375.529 kb on - strand, within ECD_02289 at 2375.776 kb on - strand, within ECD_02289 at 2375.776 kb on - strand, within ECD_02289 at 2375.776 kb on - strand, within ECD_02289 at 2376.022 kb on - strand, within ECD_02289 at 2376.118 kb on - strand at 2376.437 kb on - strand at 2376.527 kb on + strand at 2376.528 kb on - strand at 2376.614 kb on - strand at 2376.775 kb on - strand, within ECD_02290 at 2376.775 kb on - strand, within ECD_02290 at 2376.775 kb on - strand, within ECD_02290 at 2376.775 kb on - strand, within ECD_02290 at 2376.775 kb on - strand, within ECD_02290 at 2376.778 kb on + strand, within ECD_02290 at 2376.779 kb on - strand, within ECD_02290 at 2376.779 kb on - strand, within ECD_02290 at 2376.925 kb on + strand, within ECD_02290 at 2377.069 kb on + strand, within ECD_02290 at 2377.115 kb on - strand, within ECD_02290
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 2,373,982 + ECD_02288 0.49 +0.6 2,373,986 + ECD_02288 0.50 -1.1 2,373,987 - ECD_02288 0.50 +0.1 2,374,000 + ECD_02288 0.51 -1.2 2,374,069 + ECD_02288 0.59 -1.2 2,374,136 + ECD_02288 0.66 -0.9 2,374,205 + ECD_02288 0.73 +0.2 2,374,448 + -1.7 2,374,448 + -0.5 2,374,648 + +0.3 2,374,719 + +1.3 2,374,759 + -0.3 2,374,760 - +0.4 2,374,785 - ECD_04338 0.21 -0.7 2,374,963 - +0.1 2,374,963 - +0.5 2,375,011 - +1.4 2,375,169 - ECD_02289 0.18 +1.5 2,375,255 - ECD_02289 0.25 +1.0 2,375,274 - ECD_02289 0.27 +0.7 2,375,376 + ECD_02289 0.35 +1.4 2,375,416 - ECD_02289 0.38 +1.2 2,375,503 - ECD_02289 0.45 +2.3 2,375,529 - ECD_02289 0.47 +1.2 2,375,776 - ECD_02289 0.67 +1.4 2,375,776 - ECD_02289 0.67 +1.5 2,375,776 - ECD_02289 0.67 +1.5 2,376,022 - ECD_02289 0.87 +1.2 2,376,118 - +0.4 2,376,437 - -1.3 2,376,527 + +0.2 2,376,528 - -0.1 2,376,614 - -1.0 2,376,775 - ECD_02290 0.13 -0.3 2,376,775 - ECD_02290 0.13 -0.1 2,376,775 - ECD_02290 0.13 -2.2 2,376,775 - ECD_02290 0.13 +0.4 2,376,775 - ECD_02290 0.13 -0.5 2,376,778 + ECD_02290 0.13 +0.5 2,376,779 - ECD_02290 0.13 +0.3 2,376,779 - ECD_02290 0.13 +0.4 2,376,925 + ECD_02290 0.22 -1.3 2,377,069 + ECD_02290 0.30 -1.4 2,377,115 - ECD_02290 0.33 -0.7
Or see this region's nucleotide sequence