Strain Fitness in Escherichia coli BL21 around ECD_02232

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02230 and ECD_02231 are separated by 196 nucleotidesECD_02231 and ECD_02232 are separated by 7 nucleotidesECD_02232 and ECD_02233 overlap by 4 nucleotidesECD_02233 and ECD_02234 are separated by 89 nucleotides ECD_02230: ECD_02230 - transposase_31 family protein, at 2,309,902 to 2,310,792 _02230 ECD_02231: ECD_02231 - histidine ABC transporter ATPase, at 2,310,989 to 2,311,762 _02231 ECD_02232: ECD_02232 - histidine ABC transporter permease, at 2,311,770 to 2,312,486 _02232 ECD_02233: ECD_02233 - histidine ABC transporter permease, at 2,312,483 to 2,313,169 _02233 ECD_02234: ECD_02234 - histidine ABC transporter periplasmic binding protein, at 2,313,259 to 2,314,041 _02234 Position (kb) 2311 2312 2313Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2310.991 kb on - strandat 2311.106 kb on - strand, within ECD_02231at 2311.184 kb on - strand, within ECD_02231at 2311.445 kb on - strand, within ECD_02231at 2311.445 kb on - strand, within ECD_02231at 2311.665 kb on - strand, within ECD_02231at 2311.665 kb on - strand, within ECD_02231at 2311.746 kb on - strandat 2311.746 kb on - strandat 2311.843 kb on + strand, within ECD_02232at 2311.843 kb on + strand, within ECD_02232at 2311.843 kb on + strand, within ECD_02232at 2311.844 kb on - strand, within ECD_02232at 2311.844 kb on - strand, within ECD_02232at 2311.854 kb on + strand, within ECD_02232at 2311.898 kb on - strand, within ECD_02232at 2312.000 kb on - strand, within ECD_02232at 2312.016 kb on - strand, within ECD_02232at 2312.239 kb on + strand, within ECD_02232at 2312.273 kb on - strand, within ECD_02232at 2312.273 kb on - strand, within ECD_02232at 2312.301 kb on - strand, within ECD_02232at 2312.800 kb on + strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.801 kb on - strand, within ECD_02233at 2312.851 kb on - strand, within ECD_02233at 2312.859 kb on + strand, within ECD_02233at 2312.860 kb on - strand, within ECD_02233at 2312.864 kb on - strand, within ECD_02233at 2312.878 kb on + strand, within ECD_02233at 2312.985 kb on - strand, within ECD_02233at 2312.985 kb on - strand, within ECD_02233at 2313.099 kb on - strand, within ECD_02233at 2313.270 kb on - strandat 2313.309 kb on - strandat 2313.309 kb on - strandat 2313.375 kb on + strand, within ECD_02234

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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2,310,991 - -0.4
2,311,106 - ECD_02231 0.15 -1.2
2,311,184 - ECD_02231 0.25 -1.1
2,311,445 - ECD_02231 0.59 +2.8
2,311,445 - ECD_02231 0.59 -0.4
2,311,665 - ECD_02231 0.87 +0.7
2,311,665 - ECD_02231 0.87 +2.6
2,311,746 - -0.2
2,311,746 - -0.8
2,311,843 + ECD_02232 0.10 -1.1
2,311,843 + ECD_02232 0.10 -1.2
2,311,843 + ECD_02232 0.10 -1.5
2,311,844 - ECD_02232 0.10 +0.3
2,311,844 - ECD_02232 0.10 +2.0
2,311,854 + ECD_02232 0.12 -1.7
2,311,898 - ECD_02232 0.18 -1.7
2,312,000 - ECD_02232 0.32 -0.5
2,312,016 - ECD_02232 0.34 -2.1
2,312,239 + ECD_02232 0.65 -0.6
2,312,273 - ECD_02232 0.70 -1.0
2,312,273 - ECD_02232 0.70 -0.5
2,312,301 - ECD_02232 0.74 +2.2
2,312,800 + ECD_02233 0.46 -0.2
2,312,801 - ECD_02233 0.46 +0.7
2,312,801 - ECD_02233 0.46 -0.9
2,312,801 - ECD_02233 0.46 +1.1
2,312,801 - ECD_02233 0.46 +0.8
2,312,801 - ECD_02233 0.46 -0.1
2,312,851 - ECD_02233 0.54 +0.5
2,312,859 + ECD_02233 0.55 -0.5
2,312,860 - ECD_02233 0.55 +0.2
2,312,864 - ECD_02233 0.55 -0.6
2,312,878 + ECD_02233 0.57 -1.0
2,312,985 - ECD_02233 0.73 -0.3
2,312,985 - ECD_02233 0.73 -0.4
2,313,099 - ECD_02233 0.90 +1.0
2,313,270 - -0.2
2,313,309 - -0.8
2,313,309 - +0.0
2,313,375 + ECD_02234 0.15 -0.9

Or see this region's nucleotide sequence