Strain Fitness in Escherichia coli BL21 around ECD_02191

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02189 and ECD_02190 are separated by 14 nucleotidesECD_02190 and ECD_02191 overlap by 4 nucleotidesECD_02191 and ECD_02192 are separated by 88 nucleotides ECD_02189: ECD_02189 - dihydroxynaphthoic acid synthetase, at 2,266,136 to 2,266,993 _02189 ECD_02190: ECD_02190 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,267,008 to 2,267,766 _02190 ECD_02191: ECD_02191 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase, at 2,267,763 to 2,269,433 _02191 ECD_02192: ECD_02192 - isochorismate synthase 2, at 2,269,522 to 2,270,817 _02192 Position (kb) 2267 2268 2269 2270Strain fitness (log2 ratio) -2 -1 0 1 2at 2267.195 kb on - strand, within ECD_02190at 2267.559 kb on + strand, within ECD_02190at 2267.598 kb on + strand, within ECD_02190at 2267.636 kb on + strand, within ECD_02190at 2267.637 kb on - strand, within ECD_02190at 2267.637 kb on - strand, within ECD_02190at 2267.637 kb on - strand, within ECD_02190at 2267.637 kb on - strand, within ECD_02190at 2267.767 kb on - strandat 2268.095 kb on - strand, within ECD_02191at 2268.206 kb on - strand, within ECD_02191at 2268.267 kb on - strand, within ECD_02191at 2268.446 kb on + strand, within ECD_02191at 2268.884 kb on + strand, within ECD_02191at 2268.885 kb on - strand, within ECD_02191at 2268.885 kb on - strand, within ECD_02191at 2268.911 kb on - strand, within ECD_02191at 2269.102 kb on - strand, within ECD_02191at 2269.331 kb on + strandat 2269.416 kb on - strandat 2269.426 kb on - strandat 2269.426 kb on - strandat 2269.461 kb on + strandat 2269.466 kb on - strandat 2269.468 kb on - strandat 2269.468 kb on - strandat 2269.484 kb on - strandat 2269.624 kb on + strandat 2269.624 kb on + strandat 2269.624 kb on + strandat 2269.811 kb on - strand, within ECD_02192at 2269.931 kb on - strand, within ECD_02192at 2270.006 kb on - strand, within ECD_02192at 2270.035 kb on - strand, within ECD_02192

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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2,267,195 - ECD_02190 0.25 +0.2
2,267,559 + ECD_02190 0.73 +1.9
2,267,598 + ECD_02190 0.78 -1.4
2,267,636 + ECD_02190 0.83 +0.1
2,267,637 - ECD_02190 0.83 +0.6
2,267,637 - ECD_02190 0.83 -0.5
2,267,637 - ECD_02190 0.83 -0.2
2,267,637 - ECD_02190 0.83 -0.0
2,267,767 - +1.2
2,268,095 - ECD_02191 0.20 -0.6
2,268,206 - ECD_02191 0.27 -0.7
2,268,267 - ECD_02191 0.30 +0.4
2,268,446 + ECD_02191 0.41 +0.2
2,268,884 + ECD_02191 0.67 -1.1
2,268,885 - ECD_02191 0.67 +0.6
2,268,885 - ECD_02191 0.67 +2.1
2,268,911 - ECD_02191 0.69 +1.7
2,269,102 - ECD_02191 0.80 -1.5
2,269,331 + +1.2
2,269,416 - -0.1
2,269,426 - -0.1
2,269,426 - -1.1
2,269,461 + +0.5
2,269,466 - +0.1
2,269,468 - +0.7
2,269,468 - -0.2
2,269,484 - +0.4
2,269,624 + -2.3
2,269,624 + -0.1
2,269,624 + -1.5
2,269,811 - ECD_02192 0.22 -0.5
2,269,931 - ECD_02192 0.32 -2.1
2,270,006 - ECD_02192 0.37 +0.5
2,270,035 - ECD_02192 0.40 +0.5

Or see this region's nucleotide sequence