Strain Fitness in Escherichia coli BL21 around ECD_02190

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02188 and ECD_02189 overlap by 1 nucleotidesECD_02189 and ECD_02190 are separated by 14 nucleotidesECD_02190 and ECD_02191 overlap by 4 nucleotides ECD_02188: ECD_02188 - O-succinylbenzoyl-CoA synthase, at 2,265,174 to 2,266,136 _02188 ECD_02189: ECD_02189 - dihydroxynaphthoic acid synthetase, at 2,266,136 to 2,266,993 _02189 ECD_02190: ECD_02190 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,267,008 to 2,267,766 _02190 ECD_02191: ECD_02191 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase, at 2,267,763 to 2,269,433 _02191 Position (kb) 2267 2268Strain fitness (log2 ratio) -1 0 1 2at 2266.046 kb on - strandat 2266.046 kb on - strandat 2266.486 kb on - strand, within ECD_02189at 2266.549 kb on + strand, within ECD_02189at 2266.609 kb on - strand, within ECD_02189at 2266.686 kb on - strand, within ECD_02189at 2266.686 kb on - strand, within ECD_02189at 2267.195 kb on - strand, within ECD_02190at 2267.559 kb on + strand, within ECD_02190at 2267.598 kb on + strand, within ECD_02190at 2267.636 kb on + strand, within ECD_02190at 2267.637 kb on - strand, within ECD_02190at 2267.637 kb on - strand, within ECD_02190at 2267.637 kb on - strand, within ECD_02190at 2267.637 kb on - strand, within ECD_02190at 2267.767 kb on - strandat 2268.095 kb on - strand, within ECD_02191at 2268.206 kb on - strand, within ECD_02191at 2268.267 kb on - strand, within ECD_02191at 2268.446 kb on + strand, within ECD_02191

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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2,266,046 - +0.9
2,266,046 - +1.2
2,266,486 - ECD_02189 0.41 +2.0
2,266,549 + ECD_02189 0.48 -0.9
2,266,609 - ECD_02189 0.55 -1.4
2,266,686 - ECD_02189 0.64 +0.6
2,266,686 - ECD_02189 0.64 +0.6
2,267,195 - ECD_02190 0.25 +0.2
2,267,559 + ECD_02190 0.73 +1.9
2,267,598 + ECD_02190 0.78 -1.4
2,267,636 + ECD_02190 0.83 +0.1
2,267,637 - ECD_02190 0.83 +0.6
2,267,637 - ECD_02190 0.83 -0.5
2,267,637 - ECD_02190 0.83 -0.2
2,267,637 - ECD_02190 0.83 -0.0
2,267,767 - +1.2
2,268,095 - ECD_02191 0.20 -0.6
2,268,206 - ECD_02191 0.27 -0.7
2,268,267 - ECD_02191 0.30 +0.4
2,268,446 + ECD_02191 0.41 +0.2

Or see this region's nucleotide sequence