Strain Fitness in Escherichia coli BL21 around ECD_02173

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02172 and ECD_02173 are separated by 56 nucleotidesECD_02173 and ECD_02174 are separated by 14 nucleotides ECD_02172: ECD_02172 - putative L-rhamnonate transporter, at 2,249,037 to 2,250,326 _02172 ECD_02173: ECD_02173 - L-rhamnonate dehydratase, at 2,250,383 to 2,251,588 _02173 ECD_02174: ECD_02174 - putative DNA-binding transcriptional regulator for the rhm operon, at 2,251,603 to 2,252,385 _02174 Position (kb) 2250 2251 2252Strain fitness (log2 ratio) -2 -1 0 1 2at 2249.599 kb on - strand, within ECD_02172at 2249.599 kb on - strand, within ECD_02172at 2249.891 kb on - strand, within ECD_02172at 2249.891 kb on - strand, within ECD_02172at 2250.072 kb on - strand, within ECD_02172at 2250.138 kb on + strand, within ECD_02172at 2250.139 kb on - strand, within ECD_02172at 2250.343 kb on + strandat 2250.344 kb on - strandat 2250.394 kb on - strandat 2250.823 kb on - strand, within ECD_02173at 2250.864 kb on + strand, within ECD_02173at 2250.898 kb on - strand, within ECD_02173at 2251.225 kb on - strand, within ECD_02173at 2251.227 kb on + strand, within ECD_02173at 2251.688 kb on + strand, within ECD_02174at 2251.800 kb on - strand, within ECD_02174at 2251.818 kb on - strand, within ECD_02174at 2251.818 kb on - strand, within ECD_02174at 2252.087 kb on - strand, within ECD_02174at 2252.259 kb on - strand, within ECD_02174at 2252.401 kb on + strandat 2252.402 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
remove
2,249,599 - ECD_02172 0.44 +0.5
2,249,599 - ECD_02172 0.44 -0.4
2,249,891 - ECD_02172 0.66 +0.0
2,249,891 - ECD_02172 0.66 +0.2
2,250,072 - ECD_02172 0.80 +2.3
2,250,138 + ECD_02172 0.85 +0.1
2,250,139 - ECD_02172 0.85 -0.2
2,250,343 + -1.1
2,250,344 - -0.9
2,250,394 - +0.2
2,250,823 - ECD_02173 0.36 -1.6
2,250,864 + ECD_02173 0.40 +0.9
2,250,898 - ECD_02173 0.43 +1.3
2,251,225 - ECD_02173 0.70 -0.7
2,251,227 + ECD_02173 0.70 -0.7
2,251,688 + ECD_02174 0.11 -0.1
2,251,800 - ECD_02174 0.25 +2.3
2,251,818 - ECD_02174 0.27 -0.7
2,251,818 - ECD_02174 0.27 -0.8
2,252,087 - ECD_02174 0.62 -2.1
2,252,259 - ECD_02174 0.84 -0.9
2,252,401 + +1.3
2,252,402 - -0.1

Or see this region's nucleotide sequence