Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02096 and ECD_02097 are separated by 16 nucleotides ECD_02097 and ECD_02098 overlap by 1 nucleotides
ECD_02096: ECD_02096 - fused fructose-specific PTS enzymes: IIBcomponent/IIC components, at 2,154,568 to 2,156,259
_02096
ECD_02097: ECD_02097 - fructose-1-phosphate kinase, at 2,156,276 to 2,157,214
_02097
ECD_02098: ECD_02098 - fused fructose-specific PTS enzymes: IIA component/HPr component, at 2,157,214 to 2,158,344
_02098
Position (kb)
2156
2157
2158 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2155.300 kb on - strand, within ECD_02096 at 2155.398 kb on - strand, within ECD_02096 at 2155.554 kb on - strand, within ECD_02096 at 2155.554 kb on - strand, within ECD_02096 at 2155.554 kb on - strand, within ECD_02096 at 2155.554 kb on - strand, within ECD_02096 at 2155.554 kb on - strand, within ECD_02096 at 2155.718 kb on + strand, within ECD_02096 at 2155.719 kb on - strand, within ECD_02096 at 2155.719 kb on - strand, within ECD_02096 at 2155.792 kb on + strand, within ECD_02096 at 2156.209 kb on - strand at 2156.210 kb on + strand at 2156.210 kb on + strand at 2156.211 kb on - strand at 2156.211 kb on - strand at 2156.292 kb on - strand at 2156.292 kb on - strand at 2156.336 kb on - strand at 2156.339 kb on - strand at 2156.358 kb on - strand at 2156.447 kb on - strand, within ECD_02097 at 2156.472 kb on - strand, within ECD_02097 at 2156.552 kb on - strand, within ECD_02097 at 2156.552 kb on - strand, within ECD_02097 at 2156.958 kb on - strand, within ECD_02097 at 2157.069 kb on - strand, within ECD_02097 at 2157.194 kb on - strand at 2157.197 kb on - strand at 2157.319 kb on - strand at 2157.349 kb on - strand, within ECD_02098 at 2157.349 kb on - strand, within ECD_02098 at 2157.405 kb on + strand, within ECD_02098 at 2157.571 kb on - strand, within ECD_02098 at 2157.745 kb on - strand, within ECD_02098 at 2158.065 kb on - strand, within ECD_02098 at 2158.168 kb on - strand, within ECD_02098
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 2,155,300 - ECD_02096 0.43 -0.6 2,155,398 - ECD_02096 0.49 +0.3 2,155,554 - ECD_02096 0.58 -0.2 2,155,554 - ECD_02096 0.58 +2.3 2,155,554 - ECD_02096 0.58 -0.2 2,155,554 - ECD_02096 0.58 +0.9 2,155,554 - ECD_02096 0.58 +0.4 2,155,718 + ECD_02096 0.68 +1.7 2,155,719 - ECD_02096 0.68 +0.7 2,155,719 - ECD_02096 0.68 +0.3 2,155,792 + ECD_02096 0.72 +1.5 2,156,209 - +0.9 2,156,210 + -1.6 2,156,210 + -0.0 2,156,211 - -0.6 2,156,211 - -0.0 2,156,292 - -0.2 2,156,292 - +2.1 2,156,336 - +1.8 2,156,339 - +2.4 2,156,358 - +1.4 2,156,447 - ECD_02097 0.18 +2.4 2,156,472 - ECD_02097 0.21 +1.2 2,156,552 - ECD_02097 0.29 +2.0 2,156,552 - ECD_02097 0.29 +2.3 2,156,958 - ECD_02097 0.73 +2.3 2,157,069 - ECD_02097 0.84 +2.1 2,157,194 - +2.3 2,157,197 - +2.1 2,157,319 - -0.1 2,157,349 - ECD_02098 0.12 +1.7 2,157,349 - ECD_02098 0.12 +1.6 2,157,405 + ECD_02098 0.17 +0.6 2,157,571 - ECD_02098 0.32 +1.3 2,157,745 - ECD_02098 0.47 +0.7 2,158,065 - ECD_02098 0.75 +3.1 2,158,168 - ECD_02098 0.84 +0.4
Or see this region's nucleotide sequence