Strain Fitness in Escherichia coli BL21 around ECD_01891

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01890 and ECD_t00033 are separated by 100 nucleotidesECD_t00033 and ECD_01891 are separated by 238 nucleotides ECD_01890: ECD_01890 - anti-repressor for DgsA(Mlc), at 1,948,798 to 1,949,595 _01890 ECD_t00033: ECD_t00033 - tRNA-Asn, at 1,949,696 to 1,949,771 _t00033 ECD_01891: ECD_01891 - putative adhesin, at 1,950,010 to 1,957,161 _01891 Position (kb) 1950 1951 1952 1953 1954 1955 1956 1957 1958Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1949.140 kb on - strand, within ECD_01890at 1949.298 kb on + strand, within ECD_01890at 1950.131 kb on + strandat 1950.514 kb on - strandat 1950.762 kb on + strand, within ECD_01891at 1951.010 kb on + strand, within ECD_01891at 1951.119 kb on + strand, within ECD_01891at 1951.146 kb on + strand, within ECD_01891at 1951.701 kb on - strand, within ECD_01891at 1951.864 kb on + strand, within ECD_01891at 1952.052 kb on - strand, within ECD_01891at 1952.064 kb on + strand, within ECD_01891at 1952.189 kb on - strand, within ECD_01891at 1952.312 kb on + strand, within ECD_01891at 1953.042 kb on + strand, within ECD_01891at 1953.042 kb on + strand, within ECD_01891at 1953.132 kb on + strand, within ECD_01891at 1953.132 kb on + strand, within ECD_01891at 1953.133 kb on - strand, within ECD_01891at 1953.768 kb on + strand, within ECD_01891at 1954.117 kb on - strand, within ECD_01891at 1954.216 kb on + strand, within ECD_01891at 1954.218 kb on + strand, within ECD_01891at 1954.314 kb on + strand, within ECD_01891at 1954.315 kb on - strand, within ECD_01891at 1954.317 kb on - strand, within ECD_01891at 1954.317 kb on - strand, within ECD_01891at 1954.318 kb on + strand, within ECD_01891at 1954.321 kb on - strand, within ECD_01891at 1954.432 kb on + strand, within ECD_01891at 1954.432 kb on + strand, within ECD_01891at 1954.432 kb on + strand, within ECD_01891at 1954.432 kb on + strand, within ECD_01891at 1954.433 kb on - strand, within ECD_01891at 1954.433 kb on - strand, within ECD_01891at 1954.632 kb on + strand, within ECD_01891at 1954.633 kb on - strand, within ECD_01891at 1954.914 kb on + strand, within ECD_01891at 1954.997 kb on - strand, within ECD_01891at 1955.099 kb on + strand, within ECD_01891at 1955.099 kb on + strand, within ECD_01891at 1955.100 kb on - strand, within ECD_01891at 1955.542 kb on - strand, within ECD_01891at 1955.544 kb on + strand, within ECD_01891at 1955.594 kb on - strand, within ECD_01891at 1955.707 kb on - strand, within ECD_01891at 1956.017 kb on + strand, within ECD_01891at 1956.018 kb on - strand, within ECD_01891at 1956.018 kb on - strand, within ECD_01891at 1956.018 kb on - strand, within ECD_01891at 1956.018 kb on - strand, within ECD_01891at 1956.119 kb on + strand, within ECD_01891at 1956.232 kb on - strand, within ECD_01891at 1956.233 kb on + strand, within ECD_01891at 1956.234 kb on - strand, within ECD_01891at 1956.308 kb on - strand, within ECD_01891at 1956.308 kb on - strand, within ECD_01891at 1956.348 kb on - strand, within ECD_01891at 1956.348 kb on - strand, within ECD_01891at 1956.658 kb on + strandat 1956.827 kb on - strandat 1956.827 kb on - strandat 1956.943 kb on + strandat 1957.042 kb on + strandat 1957.297 kb on + strandat 1957.413 kb on - strandat 1957.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,949,140 - ECD_01890 0.43 -0.3
1,949,298 + ECD_01890 0.63 +2.1
1,950,131 + -0.6
1,950,514 - -0.5
1,950,762 + ECD_01891 0.11 -0.1
1,951,010 + ECD_01891 0.14 +1.4
1,951,119 + ECD_01891 0.16 +3.7
1,951,146 + ECD_01891 0.16 +1.7
1,951,701 - ECD_01891 0.24 +0.9
1,951,864 + ECD_01891 0.26 +2.9
1,952,052 - ECD_01891 0.29 -1.6
1,952,064 + ECD_01891 0.29 +1.7
1,952,189 - ECD_01891 0.30 +0.2
1,952,312 + ECD_01891 0.32 +0.9
1,953,042 + ECD_01891 0.42 -1.5
1,953,042 + ECD_01891 0.42 +1.5
1,953,132 + ECD_01891 0.44 +0.6
1,953,132 + ECD_01891 0.44 -0.3
1,953,133 - ECD_01891 0.44 +1.7
1,953,768 + ECD_01891 0.53 +0.5
1,954,117 - ECD_01891 0.57 -0.4
1,954,216 + ECD_01891 0.59 +0.5
1,954,218 + ECD_01891 0.59 -1.0
1,954,314 + ECD_01891 0.60 +0.1
1,954,315 - ECD_01891 0.60 +0.1
1,954,317 - ECD_01891 0.60 +1.7
1,954,317 - ECD_01891 0.60 +1.4
1,954,318 + ECD_01891 0.60 -0.8
1,954,321 - ECD_01891 0.60 -0.1
1,954,432 + ECD_01891 0.62 +0.3
1,954,432 + ECD_01891 0.62 +1.7
1,954,432 + ECD_01891 0.62 -0.4
1,954,432 + ECD_01891 0.62 +0.5
1,954,433 - ECD_01891 0.62 -0.5
1,954,433 - ECD_01891 0.62 +0.9
1,954,632 + ECD_01891 0.65 +0.9
1,954,633 - ECD_01891 0.65 +0.6
1,954,914 + ECD_01891 0.69 +1.1
1,954,997 - ECD_01891 0.70 -1.0
1,955,099 + ECD_01891 0.71 +0.7
1,955,099 + ECD_01891 0.71 +1.2
1,955,100 - ECD_01891 0.71 -1.8
1,955,542 - ECD_01891 0.77 -1.8
1,955,544 + ECD_01891 0.77 +1.4
1,955,594 - ECD_01891 0.78 +0.0
1,955,707 - ECD_01891 0.80 +0.0
1,956,017 + ECD_01891 0.84 +1.7
1,956,018 - ECD_01891 0.84 +3.7
1,956,018 - ECD_01891 0.84 +1.0
1,956,018 - ECD_01891 0.84 -1.2
1,956,018 - ECD_01891 0.84 -0.8
1,956,119 + ECD_01891 0.85 +0.7
1,956,232 - ECD_01891 0.87 +0.1
1,956,233 + ECD_01891 0.87 +0.9
1,956,234 - ECD_01891 0.87 -0.8
1,956,308 - ECD_01891 0.88 +0.4
1,956,308 - ECD_01891 0.88 +0.7
1,956,348 - ECD_01891 0.89 +1.7
1,956,348 - ECD_01891 0.89 +2.4
1,956,658 + -0.8
1,956,827 - +0.8
1,956,827 - -0.3
1,956,943 + -0.8
1,957,042 + +0.2
1,957,297 + +0.5
1,957,413 - -0.5
1,957,475 - -0.4

Or see this region's nucleotide sequence