Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01890 and ECD_t00033 are separated by 100 nucleotides ECD_t00033 and ECD_01891 are separated by 238 nucleotides
ECD_01890: ECD_01890 - anti-repressor for DgsA(Mlc), at 1,948,798 to 1,949,595
_01890
ECD_t00033: ECD_t00033 - tRNA-Asn, at 1,949,696 to 1,949,771
_t00033
ECD_01891: ECD_01891 - putative adhesin, at 1,950,010 to 1,957,161
_01891
Position (kb)
1950
1951
1952
1953
1954
1955
1956
1957
1958 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1949.140 kb on - strand, within ECD_01890 at 1949.298 kb on + strand, within ECD_01890 at 1950.131 kb on + strand at 1950.514 kb on - strand at 1950.762 kb on + strand, within ECD_01891 at 1951.010 kb on + strand, within ECD_01891 at 1951.119 kb on + strand, within ECD_01891 at 1951.146 kb on + strand, within ECD_01891 at 1951.701 kb on - strand, within ECD_01891 at 1951.864 kb on + strand, within ECD_01891 at 1952.052 kb on - strand, within ECD_01891 at 1952.064 kb on + strand, within ECD_01891 at 1952.189 kb on - strand, within ECD_01891 at 1952.312 kb on + strand, within ECD_01891 at 1953.042 kb on + strand, within ECD_01891 at 1953.042 kb on + strand, within ECD_01891 at 1953.132 kb on + strand, within ECD_01891 at 1953.132 kb on + strand, within ECD_01891 at 1953.133 kb on - strand, within ECD_01891 at 1953.768 kb on + strand, within ECD_01891 at 1954.117 kb on - strand, within ECD_01891 at 1954.216 kb on + strand, within ECD_01891 at 1954.218 kb on + strand, within ECD_01891 at 1954.314 kb on + strand, within ECD_01891 at 1954.315 kb on - strand, within ECD_01891 at 1954.317 kb on - strand, within ECD_01891 at 1954.317 kb on - strand, within ECD_01891 at 1954.318 kb on + strand, within ECD_01891 at 1954.321 kb on - strand, within ECD_01891 at 1954.432 kb on + strand, within ECD_01891 at 1954.432 kb on + strand, within ECD_01891 at 1954.432 kb on + strand, within ECD_01891 at 1954.432 kb on + strand, within ECD_01891 at 1954.433 kb on - strand, within ECD_01891 at 1954.433 kb on - strand, within ECD_01891 at 1954.632 kb on + strand, within ECD_01891 at 1954.633 kb on - strand, within ECD_01891 at 1954.914 kb on + strand, within ECD_01891 at 1954.997 kb on - strand, within ECD_01891 at 1955.099 kb on + strand, within ECD_01891 at 1955.099 kb on + strand, within ECD_01891 at 1955.100 kb on - strand, within ECD_01891 at 1955.542 kb on - strand, within ECD_01891 at 1955.544 kb on + strand, within ECD_01891 at 1955.594 kb on - strand, within ECD_01891 at 1955.707 kb on - strand, within ECD_01891 at 1956.017 kb on + strand, within ECD_01891 at 1956.018 kb on - strand, within ECD_01891 at 1956.018 kb on - strand, within ECD_01891 at 1956.018 kb on - strand, within ECD_01891 at 1956.018 kb on - strand, within ECD_01891 at 1956.119 kb on + strand, within ECD_01891 at 1956.232 kb on - strand, within ECD_01891 at 1956.233 kb on + strand, within ECD_01891 at 1956.234 kb on - strand, within ECD_01891 at 1956.308 kb on - strand, within ECD_01891 at 1956.308 kb on - strand, within ECD_01891 at 1956.348 kb on - strand, within ECD_01891 at 1956.348 kb on - strand, within ECD_01891 at 1956.658 kb on + strand at 1956.827 kb on - strand at 1956.827 kb on - strand at 1956.943 kb on + strand at 1957.042 kb on + strand at 1957.297 kb on + strand at 1957.413 kb on - strand at 1957.475 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,949,140 - ECD_01890 0.43 -0.3 1,949,298 + ECD_01890 0.63 +2.1 1,950,131 + -0.6 1,950,514 - -0.5 1,950,762 + ECD_01891 0.11 -0.1 1,951,010 + ECD_01891 0.14 +1.4 1,951,119 + ECD_01891 0.16 +3.7 1,951,146 + ECD_01891 0.16 +1.7 1,951,701 - ECD_01891 0.24 +0.9 1,951,864 + ECD_01891 0.26 +2.9 1,952,052 - ECD_01891 0.29 -1.6 1,952,064 + ECD_01891 0.29 +1.7 1,952,189 - ECD_01891 0.30 +0.2 1,952,312 + ECD_01891 0.32 +0.9 1,953,042 + ECD_01891 0.42 -1.5 1,953,042 + ECD_01891 0.42 +1.5 1,953,132 + ECD_01891 0.44 +0.6 1,953,132 + ECD_01891 0.44 -0.3 1,953,133 - ECD_01891 0.44 +1.7 1,953,768 + ECD_01891 0.53 +0.5 1,954,117 - ECD_01891 0.57 -0.4 1,954,216 + ECD_01891 0.59 +0.5 1,954,218 + ECD_01891 0.59 -1.0 1,954,314 + ECD_01891 0.60 +0.1 1,954,315 - ECD_01891 0.60 +0.1 1,954,317 - ECD_01891 0.60 +1.7 1,954,317 - ECD_01891 0.60 +1.4 1,954,318 + ECD_01891 0.60 -0.8 1,954,321 - ECD_01891 0.60 -0.1 1,954,432 + ECD_01891 0.62 +0.3 1,954,432 + ECD_01891 0.62 +1.7 1,954,432 + ECD_01891 0.62 -0.4 1,954,432 + ECD_01891 0.62 +0.5 1,954,433 - ECD_01891 0.62 -0.5 1,954,433 - ECD_01891 0.62 +0.9 1,954,632 + ECD_01891 0.65 +0.9 1,954,633 - ECD_01891 0.65 +0.6 1,954,914 + ECD_01891 0.69 +1.1 1,954,997 - ECD_01891 0.70 -1.0 1,955,099 + ECD_01891 0.71 +0.7 1,955,099 + ECD_01891 0.71 +1.2 1,955,100 - ECD_01891 0.71 -1.8 1,955,542 - ECD_01891 0.77 -1.8 1,955,544 + ECD_01891 0.77 +1.4 1,955,594 - ECD_01891 0.78 +0.0 1,955,707 - ECD_01891 0.80 +0.0 1,956,017 + ECD_01891 0.84 +1.7 1,956,018 - ECD_01891 0.84 +3.7 1,956,018 - ECD_01891 0.84 +1.0 1,956,018 - ECD_01891 0.84 -1.2 1,956,018 - ECD_01891 0.84 -0.8 1,956,119 + ECD_01891 0.85 +0.7 1,956,232 - ECD_01891 0.87 +0.1 1,956,233 + ECD_01891 0.87 +0.9 1,956,234 - ECD_01891 0.87 -0.8 1,956,308 - ECD_01891 0.88 +0.4 1,956,308 - ECD_01891 0.88 +0.7 1,956,348 - ECD_01891 0.89 +1.7 1,956,348 - ECD_01891 0.89 +2.4 1,956,658 + -0.8 1,956,827 - +0.8 1,956,827 - -0.3 1,956,943 + -0.8 1,957,042 + +0.2 1,957,297 + +0.5 1,957,413 - -0.5 1,957,475 - -0.4
Or see this region's nucleotide sequence