Strain Fitness in Escherichia coli BL21 around ECD_01812

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01810 and ECD_01811 are separated by 12 nucleotidesECD_01811 and ECD_01812 are separated by 3 nucleotidesECD_01812 and ECD_01813 are separated by 138 nucleotidesECD_01813 and ECD_01814 are separated by 101 nucleotides ECD_01810: ECD_01810 - DUF2511 family protein, at 1,869,089 to 1,869,430 _01810 ECD_01811: ECD_01811 - inner membrane protein, at 1,869,443 to 1,870,315 _01811 ECD_01812: ECD_01812 - CopC family protein, at 1,870,319 to 1,870,693 _01812 ECD_01813: ECD_01813 - DNA polymerase III, theta subunit, at 1,870,832 to 1,871,062 _01813 ECD_01814: ECD_01814 - C-N hydrolase family protein, at 1,871,164 to 1,871,820 _01814 Position (kb) 1870 1871Strain fitness (log2 ratio) -1 0 1 2 3 4at 1869.399 kb on - strandat 1869.498 kb on - strandat 1869.580 kb on - strand, within ECD_01811at 1869.605 kb on + strand, within ECD_01811at 1869.608 kb on - strand, within ECD_01811at 1869.803 kb on - strand, within ECD_01811at 1869.869 kb on - strand, within ECD_01811at 1869.956 kb on - strand, within ECD_01811at 1870.089 kb on - strand, within ECD_01811at 1870.089 kb on - strand, within ECD_01811at 1870.320 kb on + strandat 1870.393 kb on - strand, within ECD_01812at 1870.545 kb on - strand, within ECD_01812at 1870.694 kb on - strandat 1870.697 kb on - strandat 1870.697 kb on - strandat 1870.734 kb on - strandat 1870.744 kb on - strandat 1870.796 kb on - strandat 1871.428 kb on - strand, within ECD_01814at 1871.428 kb on - strand, within ECD_01814

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,869,399 - +1.2
1,869,498 - -0.8
1,869,580 - ECD_01811 0.16 +1.3
1,869,605 + ECD_01811 0.19 +2.8
1,869,608 - ECD_01811 0.19 +0.5
1,869,803 - ECD_01811 0.41 +0.3
1,869,869 - ECD_01811 0.49 +1.2
1,869,956 - ECD_01811 0.59 +0.6
1,870,089 - ECD_01811 0.74 +0.3
1,870,089 - ECD_01811 0.74 +0.1
1,870,320 + +3.8
1,870,393 - ECD_01812 0.20 +1.1
1,870,545 - ECD_01812 0.60 -0.8
1,870,694 - -0.1
1,870,697 - +0.4
1,870,697 - -1.5
1,870,734 - +0.3
1,870,744 - -0.5
1,870,796 - -0.7
1,871,428 - ECD_01814 0.40 -0.1
1,871,428 - ECD_01814 0.40 +0.5

Or see this region's nucleotide sequence