Strain Fitness in Escherichia coli BL21 around ECD_01618

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01617 and ECD_01618 are separated by 48 nucleotidesECD_01618 and ECD_01619 are separated by 102 nucleotidesECD_01619 and ECD_01620 are separated by 36 nucleotides ECD_01617: ECD_01617 - putative oxidoreductase, at 1,669,932 to 1,670,828 _01617 ECD_01618: ECD_01618 - DUF1289 family protein, at 1,670,877 to 1,671,116 _01618 ECD_01619: ECD_01619 - transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated, at 1,671,219 to 1,671,818 _01619 ECD_01620: ECD_01620 - chromate reductase, quinone reductase, FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme, at 1,671,855 to 1,672,952 _01620 Position (kb) 1670 1671 1672Strain fitness (log2 ratio) -1 0 1 2 3at 1670.165 kb on - strand, within ECD_01617at 1670.666 kb on - strand, within ECD_01617at 1670.817 kb on - strandat 1671.319 kb on + strand, within ECD_01619at 1671.354 kb on + strand, within ECD_01619at 1671.371 kb on + strand, within ECD_01619at 1671.371 kb on + strand, within ECD_01619at 1671.486 kb on + strand, within ECD_01619at 1671.581 kb on + strand, within ECD_01619at 1671.581 kb on + strand, within ECD_01619at 1671.855 kb on - strandat 1671.991 kb on - strand, within ECD_01620

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,670,165 - ECD_01617 0.26 +0.2
1,670,666 - ECD_01617 0.82 +0.3
1,670,817 - -0.6
1,671,319 + ECD_01619 0.17 +2.5
1,671,354 + ECD_01619 0.23 +2.2
1,671,371 + ECD_01619 0.25 +2.4
1,671,371 + ECD_01619 0.25 +3.1
1,671,486 + ECD_01619 0.45 +2.1
1,671,581 + ECD_01619 0.60 +3.1
1,671,581 + ECD_01619 0.60 +2.2
1,671,855 - +0.5
1,671,991 - ECD_01620 0.12 -0.4

Or see this region's nucleotide sequence