Strain Fitness in Escherichia coli BL21 around ECD_01560

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01558 and ECD_01559 are separated by 1 nucleotidesECD_01559 and ECD_01560 are separated by 42 nucleotidesECD_01560 and ECD_01561 are separated by 194 nucleotides ECD_01558: ECD_01558 - oxidoreductase, Fe-S subunit, at 1,608,187 to 1,608,804 _01558 ECD_01559: ECD_01559 - oxidoreductase, membrane subunit, at 1,608,806 to 1,609,660 _01559 ECD_01560: ECD_01560 - twin-argninine leader-binding protein for DmsA and TorA, at 1,609,703 to 1,610,317 _01560 ECD_01561: ECD_01561 - H(+)/Cl(-) exchange transporter, at 1,610,512 to 1,611,768 _01561 Position (kb) 1609 1610 1611Strain fitness (log2 ratio) -1 0 1 2 3at 1609.252 kb on + strand, within ECD_01559at 1609.463 kb on + strand, within ECD_01559at 1609.497 kb on + strand, within ECD_01559at 1609.564 kb on + strand, within ECD_01559at 1610.487 kb on - strandat 1610.765 kb on - strand, within ECD_01561at 1611.043 kb on - strand, within ECD_01561at 1611.140 kb on + strand, within ECD_01561

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,609,252 + ECD_01559 0.52 +3.1
1,609,463 + ECD_01559 0.77 -0.3
1,609,497 + ECD_01559 0.81 +2.2
1,609,564 + ECD_01559 0.89 +0.0
1,610,487 - +0.5
1,610,765 - ECD_01561 0.20 +1.9
1,611,043 - ECD_01561 0.42 +0.2
1,611,140 + ECD_01561 0.50 +0.7

Or see this region's nucleotide sequence