Strain Fitness in Escherichia coli BL21 around ECD_01555

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01553 and ECD_01554 are separated by 2 nucleotidesECD_01554 and ECD_01555 are separated by 107 nucleotidesECD_01555 and ECD_01556 are separated by 198 nucleotides ECD_01553: ECD_01553 - spermidine N(1)-acetyltransferase, at 1,601,381 to 1,601,941 _01553 ECD_01554: ECD_01554 - UPF0257 family lipoprotein, at 1,601,944 to 1,602,654 _01554 ECD_01555: ECD_01555 - DUF1161 family periplasmic protein, at 1,602,762 to 1,603,067 _01555 ECD_01556: ECD_01556 - putative selenate reductase, periplasmic, at 1,603,266 to 1,605,692 _01556 Position (kb) 1602 1603 1604Strain fitness (log2 ratio) -1 0 1 2at 1603.135 kb on - strandat 1603.135 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
remove
1,603,135 - +2.1
1,603,135 - +0.8

Or see this region's nucleotide sequence