Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01530 and ECD_01531 are separated by 66 nucleotides ECD_01531 and ECD_01532 are separated by 216 nucleotides ECD_01532 and ECD_01533 are separated by 211 nucleotides ECD_01533 and ECD_01535 overlap by 40 nucleotides ECD_01535 and ECD_01536 are separated by 40 nucleotides
ECD_01530: ECD_01530 - hypothetical protein, at 1,590,255 to 1,590,533
_01530
ECD_01531: ECD_01531 - Qin prophage; uncharacterized protein, at 1,590,600 to 1,590,851
_01531
ECD_01532: ECD_01532 - Qin prophage; small toxic polypeptide, at 1,591,068 to 1,591,223
_01532
ECD_01533: ECD_01533 - hypothetical protein, at 1,591,435 to 1,591,524
_01533
ECD_01535: ECD_01535 - hypothetical protein, at 1,591,485 to 1,591,844
_01535
ECD_01536: ECD_01536 - hypothetical protein, at 1,591,885 to 1,592,904
_01536
ECD_01537: ECD_01537 - hypothetical protein, at 1,592,831 to 1,593,292
_01537
Position (kb) 1591
1592 Strain fitness (log2 ratio) -1
0
1
2 at 1590.756 kb on - strand, within ECD_01531 at 1591.201 kb on - strand, within ECD_01532 at 1591.408 kb on - strand at 1591.560 kb on - strand, within ECD_01535 at 1591.676 kb on - strand, within ECD_01535 at 1591.728 kb on - strand, within ECD_01535
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,590,756 - ECD_01531 0.62 -0.1 1,591,201 - ECD_01532 0.85 +2.1 1,591,408 - -0.0 1,591,560 - ECD_01535 0.21 +0.1 1,591,676 - ECD_01535 0.53 +0.4 1,591,728 - ECD_01535 0.68 +1.1
Or see this region's nucleotide sequence