Strain Fitness in Escherichia coli BL21 around ECD_01375

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01373 and ECD_01374 are separated by 98 nucleotidesECD_01374 and ECD_01375 are separated by 244 nucleotidesECD_01375 and ECD_01376 are separated by 71 nucleotidesECD_01376 and ECD_01377 overlap by 110 nucleotidesECD_01377 and ECD_01378 are separated by 340 nucleotides ECD_01373: ECD_01373 - IS1 protein InsB, at 1,444,362 to 1,444,865 _01373 ECD_01374: ECD_01374 - cytochrome b561, at 1,444,964 to 1,445,494 _01374 ECD_01375: ECD_01375 - putative periplasmic protein, at 1,445,739 to 1,445,912 _01375 ECD_01376: ECD_01376 - toxic polypeptide, small, at 1,445,984 to 1,446,133 _01376 ECD_01377: ECD_01377 - regulatory peptide, at 1,446,024 to 1,446,191 _01377 ECD_01378: ECD_01378 - methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor, at 1,446,532 to 1,448,172 _01378 Position (kb) 1445 1446Strain fitness (log2 ratio) -1 0 1 2 3 4at 1445.159 kb on + strand, within ECD_01374at 1445.182 kb on + strand, within ECD_01374at 1445.182 kb on + strand, within ECD_01374at 1445.279 kb on + strand, within ECD_01374at 1445.279 kb on + strand, within ECD_01374at 1445.356 kb on + strand, within ECD_01374at 1445.356 kb on + strand, within ECD_01374at 1445.694 kb on + strandat 1445.756 kb on + strandat 1445.879 kb on + strand, within ECD_01375at 1445.879 kb on + strand, within ECD_01375at 1446.097 kb on + strandat 1446.183 kb on + strandat 1446.215 kb on + strandat 1446.613 kb on - strandat 1446.624 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
remove
1,445,159 + ECD_01374 0.37 +0.3
1,445,182 + ECD_01374 0.41 -1.4
1,445,182 + ECD_01374 0.41 -1.2
1,445,279 + ECD_01374 0.59 +0.4
1,445,279 + ECD_01374 0.59 -0.6
1,445,356 + ECD_01374 0.74 +4.1
1,445,356 + ECD_01374 0.74 +1.2
1,445,694 + +0.0
1,445,756 + +0.7
1,445,879 + ECD_01375 0.80 +0.9
1,445,879 + ECD_01375 0.80 +1.7
1,446,097 + +0.3
1,446,183 + +1.3
1,446,215 + +1.4
1,446,613 - +0.6
1,446,624 - +1.2

Or see this region's nucleotide sequence