Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01255 and ECD_01256 are separated by 148 nucleotides ECD_01256 and ECD_01257 are separated by 6 nucleotides ECD_01257 and ECD_01258 are separated by 192 nucleotides ECD_01258 and ECD_01259 overlap by 1 nucleotides
ECD_01255: ECD_01255 - phosphatidylglycerophosphatase B, at 1,325,700 to 1,326,464
_01255
ECD_01256: ECD_01256 - DUF1049 family inner membrane protein, function unknown, at 1,326,613 to 1,326,921
_01256
ECD_01257: ECD_01257 - LPS regulatory protein; putative modulator of LpxC proteolysis, at 1,326,928 to 1,328,097
_01257
ECD_01258: ECD_01258 - orotidine-5'-phosphate decarboxylase, at 1,328,290 to 1,329,027
_01258
ECD_01259: ECD_01259 - initiation factor function partial mimic, SUI1 family, at 1,329,027 to 1,329,353
_01259
Position (kb) 1326
1327
1328
1329 Strain fitness (log2 ratio) -1
0
1
2 at 1326.135 kb on + strand, within ECD_01255 at 1326.263 kb on + strand, within ECD_01255 at 1326.340 kb on + strand, within ECD_01255 at 1326.340 kb on + strand, within ECD_01255 at 1326.340 kb on + strand, within ECD_01255 at 1326.344 kb on + strand, within ECD_01255 at 1326.345 kb on - strand, within ECD_01255 at 1326.702 kb on + strand, within ECD_01256 at 1328.361 kb on + strand at 1328.439 kb on + strand, within ECD_01258 at 1328.439 kb on + strand, within ECD_01258 at 1328.940 kb on + strand, within ECD_01258
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,326,135 + ECD_01255 0.57 +1.7 1,326,263 + ECD_01255 0.74 -0.2 1,326,340 + ECD_01255 0.84 -0.2 1,326,340 + ECD_01255 0.84 +1.9 1,326,340 + ECD_01255 0.84 +0.2 1,326,344 + ECD_01255 0.84 +1.5 1,326,345 - ECD_01255 0.84 +0.5 1,326,702 + ECD_01256 0.29 +1.2 1,328,361 + +2.4 1,328,439 + ECD_01258 0.20 -1.0 1,328,439 + ECD_01258 0.20 -0.1 1,328,940 + ECD_01258 0.88 +1.7
Or see this region's nucleotide sequence