Strain Fitness in Escherichia coli BL21 around ECD_01122

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01121 and ECD_01122 overlap by 4 nucleotidesECD_01122 and ECD_01123 overlap by 4 nucleotidesECD_01123 and ECD_01124 are separated by 13 nucleotides ECD_01121: ECD_01121 - spermidine/putrescine ABC transporter periplasmic binding protein, at 1,185,151 to 1,186,197 _01121 ECD_01122: ECD_01122 - spermidine/putrescine ABC transporter permease, at 1,186,194 to 1,186,988 _01122 ECD_01123: ECD_01123 - spermidine/putrescine ABC transporter permease, at 1,186,985 to 1,187,812 _01123 ECD_01124: ECD_01124 - spermidine/putrescine ABC transporter ATPase, at 1,187,826 to 1,188,962 _01124 Position (kb) 1186 1187Strain fitness (log2 ratio) -1 0 1 2 3 4at 1185.461 kb on - strand, within ECD_01121at 1185.478 kb on - strand, within ECD_01121at 1185.546 kb on - strand, within ECD_01121at 1185.612 kb on - strand, within ECD_01121at 1185.811 kb on - strand, within ECD_01121at 1185.945 kb on - strand, within ECD_01121at 1185.945 kb on - strand, within ECD_01121at 1186.002 kb on - strand, within ECD_01121at 1186.002 kb on - strand, within ECD_01121at 1186.023 kb on - strand, within ECD_01121at 1186.104 kb on - strandat 1186.110 kb on - strandat 1186.282 kb on - strand, within ECD_01122at 1186.417 kb on - strand, within ECD_01122at 1186.584 kb on - strand, within ECD_01122at 1186.934 kb on - strandat 1187.176 kb on - strand, within ECD_01123at 1187.649 kb on - strand, within ECD_01123

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,185,461 - ECD_01121 0.30 +0.1
1,185,478 - ECD_01121 0.31 +0.9
1,185,546 - ECD_01121 0.38 +1.3
1,185,612 - ECD_01121 0.44 +0.2
1,185,811 - ECD_01121 0.63 +0.6
1,185,945 - ECD_01121 0.76 +4.4
1,185,945 - ECD_01121 0.76 -0.1
1,186,002 - ECD_01121 0.81 +4.1
1,186,002 - ECD_01121 0.81 -0.2
1,186,023 - ECD_01121 0.83 +2.1
1,186,104 - +1.2
1,186,110 - +0.4
1,186,282 - ECD_01122 0.11 +1.5
1,186,417 - ECD_01122 0.28 +1.4
1,186,584 - ECD_01122 0.49 +1.4
1,186,934 - +1.0
1,187,176 - ECD_01123 0.23 +2.0
1,187,649 - ECD_01123 0.80 +0.9

Or see this region's nucleotide sequence