Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01083 and ECD_01084 are separated by 198 nucleotides ECD_01084 and ECD_01085 are separated by 51 nucleotides ECD_01085 and ECD_01086 are separated by 80 nucleotides
ECD_01083: ECD_01083 - m(7)GTP pyrophosphatase, at 1,148,578 to 1,149,162
_01083
ECD_01084: ECD_01084 - DUF177 family protein, at 1,149,361 to 1,149,882
_01084
ECD_01085: ECD_01085 - 50S ribosomal subunit protein L32, at 1,149,934 to 1,150,107
_01085
ECD_01086: ECD_01086 - putative phosphate acyltransferase, at 1,150,188 to 1,151,258
_01086
Position (kb) 1149
1150
1151 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 1148.950 kb on + strand, within ECD_01083 at 1148.950 kb on + strand, within ECD_01083 at 1148.951 kb on - strand, within ECD_01083 at 1148.968 kb on - strand, within ECD_01083 at 1148.972 kb on - strand, within ECD_01083 at 1149.180 kb on - strand at 1149.181 kb on + strand at 1149.181 kb on + strand at 1149.182 kb on - strand at 1149.209 kb on + strand at 1149.377 kb on + strand at 1149.402 kb on + strand at 1149.432 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.436 kb on + strand, within ECD_01084 at 1149.613 kb on + strand, within ECD_01084 at 1149.613 kb on + strand, within ECD_01084 at 1149.622 kb on + strand, within ECD_01084 at 1149.622 kb on + strand, within ECD_01084 at 1149.880 kb on + strand at 1150.210 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,148,950 + ECD_01083 0.64 +0.0 1,148,950 + ECD_01083 0.64 +2.2 1,148,951 - ECD_01083 0.64 +0.0 1,148,968 - ECD_01083 0.67 +1.2 1,148,972 - ECD_01083 0.67 +1.9 1,149,180 - +0.4 1,149,181 + +0.2 1,149,181 + +1.5 1,149,182 - +1.3 1,149,209 + -0.3 1,149,377 + +3.2 1,149,402 + +1.9 1,149,432 + ECD_01084 0.14 +2.7 1,149,436 + ECD_01084 0.14 +2.4 1,149,436 + ECD_01084 0.14 +1.7 1,149,436 + ECD_01084 0.14 +2.7 1,149,613 + ECD_01084 0.48 +4.5 1,149,613 + ECD_01084 0.48 +3.5 1,149,622 + ECD_01084 0.50 +2.9 1,149,622 + ECD_01084 0.50 +2.9 1,149,880 + +1.8 1,150,210 + +3.4
Or see this region's nucleotide sequence