Strain Fitness in Escherichia coli BL21 around ECD_01083

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01082 and ECD_01083 are separated by 111 nucleotidesECD_01083 and ECD_01084 are separated by 198 nucleotidesECD_01084 and ECD_01085 are separated by 51 nucleotides ECD_01082: ECD_01082 - 23S rRNA pseudouridine(955,2504,2580) synthase, at 1,147,507 to 1,148,466 _01082 ECD_01083: ECD_01083 - m(7)GTP pyrophosphatase, at 1,148,578 to 1,149,162 _01083 ECD_01084: ECD_01084 - DUF177 family protein, at 1,149,361 to 1,149,882 _01084 ECD_01085: ECD_01085 - 50S ribosomal subunit protein L32, at 1,149,934 to 1,150,107 _01085 Position (kb) 1148 1149 1150Strain fitness (log2 ratio) -1 0 1 2 3 4at 1147.665 kb on + strand, within ECD_01082at 1147.668 kb on + strand, within ECD_01082at 1147.707 kb on + strand, within ECD_01082at 1147.793 kb on + strand, within ECD_01082at 1147.793 kb on + strand, within ECD_01082at 1147.793 kb on + strand, within ECD_01082at 1147.795 kb on + strand, within ECD_01082at 1147.844 kb on + strand, within ECD_01082at 1147.862 kb on + strand, within ECD_01082at 1148.121 kb on + strand, within ECD_01082at 1148.166 kb on + strand, within ECD_01082at 1148.208 kb on + strand, within ECD_01082at 1148.247 kb on + strand, within ECD_01082at 1148.247 kb on + strand, within ECD_01082at 1148.476 kb on - strandat 1148.477 kb on + strandat 1148.477 kb on + strandat 1148.557 kb on - strandat 1148.743 kb on - strand, within ECD_01083at 1148.750 kb on + strand, within ECD_01083at 1148.750 kb on + strand, within ECD_01083at 1148.751 kb on - strand, within ECD_01083at 1148.751 kb on - strand, within ECD_01083at 1148.856 kb on - strand, within ECD_01083at 1148.856 kb on - strand, within ECD_01083at 1148.856 kb on - strand, within ECD_01083at 1148.856 kb on - strand, within ECD_01083at 1148.950 kb on + strand, within ECD_01083at 1148.950 kb on + strand, within ECD_01083at 1148.951 kb on - strand, within ECD_01083at 1148.968 kb on - strand, within ECD_01083at 1148.972 kb on - strand, within ECD_01083at 1149.180 kb on - strandat 1149.181 kb on + strandat 1149.181 kb on + strandat 1149.182 kb on - strandat 1149.209 kb on + strandat 1149.377 kb on + strandat 1149.402 kb on + strandat 1149.432 kb on + strand, within ECD_01084at 1149.436 kb on + strand, within ECD_01084at 1149.436 kb on + strand, within ECD_01084at 1149.436 kb on + strand, within ECD_01084at 1149.613 kb on + strand, within ECD_01084at 1149.613 kb on + strand, within ECD_01084at 1149.622 kb on + strand, within ECD_01084at 1149.622 kb on + strand, within ECD_01084at 1149.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,147,665 + ECD_01082 0.16 +1.5
1,147,668 + ECD_01082 0.17 +2.8
1,147,707 + ECD_01082 0.21 +2.0
1,147,793 + ECD_01082 0.30 +1.9
1,147,793 + ECD_01082 0.30 +2.9
1,147,793 + ECD_01082 0.30 +2.7
1,147,795 + ECD_01082 0.30 +2.3
1,147,844 + ECD_01082 0.35 +1.3
1,147,862 + ECD_01082 0.37 +2.0
1,148,121 + ECD_01082 0.64 +2.1
1,148,166 + ECD_01082 0.69 +3.0
1,148,208 + ECD_01082 0.73 +2.7
1,148,247 + ECD_01082 0.77 +2.4
1,148,247 + ECD_01082 0.77 +1.2
1,148,476 - +0.6
1,148,477 + +1.5
1,148,477 + +0.7
1,148,557 - +0.5
1,148,743 - ECD_01083 0.28 +1.4
1,148,750 + ECD_01083 0.29 -1.5
1,148,750 + ECD_01083 0.29 +0.3
1,148,751 - ECD_01083 0.30 +1.8
1,148,751 - ECD_01083 0.30 +0.9
1,148,856 - ECD_01083 0.48 +0.3
1,148,856 - ECD_01083 0.48 -0.8
1,148,856 - ECD_01083 0.48 +0.3
1,148,856 - ECD_01083 0.48 +3.2
1,148,950 + ECD_01083 0.64 +0.1
1,148,950 + ECD_01083 0.64 +2.3
1,148,951 - ECD_01083 0.64 +0.1
1,148,968 - ECD_01083 0.67 +1.3
1,148,972 - ECD_01083 0.67 +2.0
1,149,180 - +0.5
1,149,181 + +0.3
1,149,181 + +1.6
1,149,182 - +1.3
1,149,209 + -0.2
1,149,377 + +3.2
1,149,402 + +1.9
1,149,432 + ECD_01084 0.14 +2.8
1,149,436 + ECD_01084 0.14 +2.5
1,149,436 + ECD_01084 0.14 +1.7
1,149,436 + ECD_01084 0.14 +2.7
1,149,613 + ECD_01084 0.48 +4.5
1,149,613 + ECD_01084 0.48 +3.5
1,149,622 + ECD_01084 0.50 +2.9
1,149,622 + ECD_01084 0.50 +2.9
1,149,880 + +1.8

Or see this region's nucleotide sequence