Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01078 and ECD_01079 are separated by 11 nucleotides ECD_01079 and ECD_01080 are separated by 195 nucleotides
ECD_01078: ECD_01078 - flagellar hook-filament junction protein 1, at 1,140,945 to 1,142,588
_01078
ECD_01079: ECD_01079 - flagellar hook-filament junction protein, at 1,142,600 to 1,143,553
_01079
ECD_01080: ECD_01080 - endoribonuclease; RNA-binding protein, at 1,143,749 to 1,146,934
_01080
Position (kb)
1142
1143
1144 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1141.617 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.617 kb on + strand, within ECD_01078 at 1141.722 kb on + strand, within ECD_01078 at 1142.090 kb on + strand, within ECD_01078 at 1142.218 kb on + strand, within ECD_01078 at 1142.517 kb on + strand at 1142.576 kb on + strand at 1142.596 kb on + strand at 1142.596 kb on + strand at 1142.596 kb on + strand at 1142.783 kb on + strand, within ECD_01079 at 1142.835 kb on + strand, within ECD_01079 at 1142.835 kb on + strand, within ECD_01079 at 1142.839 kb on + strand, within ECD_01079 at 1143.056 kb on + strand, within ECD_01079 at 1143.056 kb on + strand, within ECD_01079 at 1143.114 kb on + strand, within ECD_01079 at 1143.145 kb on + strand, within ECD_01079 at 1143.289 kb on + strand, within ECD_01079 at 1143.348 kb on + strand, within ECD_01079 at 1143.348 kb on + strand, within ECD_01079 at 1143.387 kb on + strand, within ECD_01079 at 1143.500 kb on + strand at 1143.500 kb on + strand at 1143.502 kb on + strand at 1143.634 kb on + strand at 1143.748 kb on - strand at 1143.823 kb on + strand at 1144.035 kb on - strand at 1144.170 kb on - strand, within ECD_01080 at 1144.341 kb on - strand, within ECD_01080 at 1144.341 kb on - strand, within ECD_01080 at 1144.374 kb on - strand, within ECD_01080
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,141,617 + ECD_01078 0.41 -1.8 1,141,617 + ECD_01078 0.41 +0.1 1,141,617 + ECD_01078 0.41 +1.5 1,141,617 + ECD_01078 0.41 -0.3 1,141,722 + ECD_01078 0.47 -1.5 1,142,090 + ECD_01078 0.70 +1.2 1,142,218 + ECD_01078 0.77 -0.6 1,142,517 + +1.2 1,142,576 + -0.8 1,142,596 + +0.8 1,142,596 + +1.0 1,142,596 + -0.9 1,142,783 + ECD_01079 0.19 +0.0 1,142,835 + ECD_01079 0.25 +2.2 1,142,835 + ECD_01079 0.25 +0.2 1,142,839 + ECD_01079 0.25 -2.1 1,143,056 + ECD_01079 0.48 +0.6 1,143,056 + ECD_01079 0.48 -0.4 1,143,114 + ECD_01079 0.54 -0.4 1,143,145 + ECD_01079 0.57 -1.0 1,143,289 + ECD_01079 0.72 -1.2 1,143,348 + ECD_01079 0.78 +0.0 1,143,348 + ECD_01079 0.78 -0.0 1,143,387 + ECD_01079 0.82 +0.2 1,143,500 + +0.6 1,143,500 + -1.1 1,143,502 + +0.2 1,143,634 + +2.8 1,143,748 - +1.7 1,143,823 + +0.2 1,144,035 - +0.2 1,144,170 - ECD_01080 0.13 +0.5 1,144,341 - ECD_01080 0.19 +0.9 1,144,341 - ECD_01080 0.19 +1.2 1,144,374 - ECD_01080 0.20 +2.6
Or see this region's nucleotide sequence