Strain Fitness in Escherichia coli BL21 around ECD_01072

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01070 and ECD_01071 are separated by 11 nucleotidesECD_01071 and ECD_01072 are separated by 24 nucleotidesECD_01072 and ECD_01073 are separated by 19 nucleotidesECD_01073 and ECD_01074 are separated by 171 nucleotides ECD_01070: ECD_01070 - flagellar component of cell-proximal portion of basal-body rod, at 1,134,008 to 1,134,412 _01070 ECD_01071: ECD_01071 - flagellar hook assembly protein, at 1,134,424 to 1,135,119 _01071 ECD_01072: ECD_01072 - flagellar hook protein, at 1,135,144 to 1,136,349 _01072 ECD_01073: ECD_01073 - flagellar component of cell-proximal portion of basal-body rod, at 1,136,369 to 1,137,124 _01073 ECD_01074: ECD_01074 - flagellar component of cell-distal portion of basal-body rod, at 1,137,296 to 1,138,078 _01074 Position (kb) 1135 1136 1137Strain fitness (log2 ratio) -2 -1 0 1 2at 1134.150 kb on + strand, within ECD_01070at 1134.410 kb on + strandat 1134.423 kb on + strandat 1134.483 kb on + strandat 1134.876 kb on + strand, within ECD_01071at 1134.965 kb on + strand, within ECD_01071at 1134.965 kb on + strand, within ECD_01071at 1135.078 kb on + strandat 1135.078 kb on + strandat 1135.112 kb on + strandat 1135.239 kb on + strandat 1135.473 kb on + strand, within ECD_01072at 1135.484 kb on + strand, within ECD_01072at 1135.587 kb on + strand, within ECD_01072at 1135.675 kb on + strand, within ECD_01072at 1135.774 kb on + strand, within ECD_01072at 1135.774 kb on + strand, within ECD_01072at 1135.803 kb on + strand, within ECD_01072at 1135.875 kb on + strand, within ECD_01072at 1135.890 kb on + strand, within ECD_01072at 1135.962 kb on + strand, within ECD_01072at 1136.011 kb on + strand, within ECD_01072at 1136.259 kb on + strandat 1136.277 kb on + strandat 1136.281 kb on + strandat 1136.289 kb on + strandat 1136.337 kb on + strandat 1136.342 kb on + strandat 1136.362 kb on + strandat 1136.362 kb on + strandat 1136.384 kb on + strandat 1137.134 kb on + strandat 1137.145 kb on + strandat 1137.145 kb on + strandat 1137.145 kb on + strandat 1137.145 kb on + strandat 1137.147 kb on + strandat 1137.147 kb on + strandat 1137.147 kb on + strandat 1137.260 kb on + strandat 1137.295 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,134,150 + ECD_01070 0.35 +0.5
1,134,410 + +0.5
1,134,423 + +0.1
1,134,483 + -0.0
1,134,876 + ECD_01071 0.65 -0.7
1,134,965 + ECD_01071 0.78 +0.7
1,134,965 + ECD_01071 0.78 +1.8
1,135,078 + +0.3
1,135,078 + +1.6
1,135,112 + +0.5
1,135,239 + +0.8
1,135,473 + ECD_01072 0.27 +0.3
1,135,484 + ECD_01072 0.28 +0.1
1,135,587 + ECD_01072 0.37 -1.2
1,135,675 + ECD_01072 0.44 +0.3
1,135,774 + ECD_01072 0.52 -0.3
1,135,774 + ECD_01072 0.52 +0.4
1,135,803 + ECD_01072 0.55 +0.2
1,135,875 + ECD_01072 0.61 -0.5
1,135,890 + ECD_01072 0.62 -0.5
1,135,962 + ECD_01072 0.68 -0.6
1,136,011 + ECD_01072 0.72 +0.8
1,136,259 + -0.9
1,136,277 + -0.4
1,136,281 + +0.8
1,136,289 + -1.9
1,136,337 + +1.1
1,136,342 + +2.1
1,136,362 + -0.3
1,136,362 + +0.2
1,136,384 + +0.8
1,137,134 + -1.1
1,137,145 + +0.8
1,137,145 + +1.7
1,137,145 + +0.9
1,137,145 + -1.5
1,137,147 + +0.3
1,137,147 + +2.1
1,137,147 + +0.2
1,137,260 + -0.0
1,137,295 + -0.1

Or see this region's nucleotide sequence