Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01070 and ECD_01071 are separated by 11 nucleotides ECD_01071 and ECD_01072 are separated by 24 nucleotides ECD_01072 and ECD_01073 are separated by 19 nucleotides ECD_01073 and ECD_01074 are separated by 171 nucleotides
ECD_01070: ECD_01070 - flagellar component of cell-proximal portion of basal-body rod, at 1,134,008 to 1,134,412
_01070
ECD_01071: ECD_01071 - flagellar hook assembly protein, at 1,134,424 to 1,135,119
_01071
ECD_01072: ECD_01072 - flagellar hook protein, at 1,135,144 to 1,136,349
_01072
ECD_01073: ECD_01073 - flagellar component of cell-proximal portion of basal-body rod, at 1,136,369 to 1,137,124
_01073
ECD_01074: ECD_01074 - flagellar component of cell-distal portion of basal-body rod, at 1,137,296 to 1,138,078
_01074
Position (kb)
1135
1136
1137 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1134.150 kb on + strand, within ECD_01070 at 1134.410 kb on + strand at 1134.423 kb on + strand at 1134.483 kb on + strand at 1134.876 kb on + strand, within ECD_01071 at 1134.965 kb on + strand, within ECD_01071 at 1134.965 kb on + strand, within ECD_01071 at 1135.078 kb on + strand at 1135.078 kb on + strand at 1135.112 kb on + strand at 1135.239 kb on + strand at 1135.473 kb on + strand, within ECD_01072 at 1135.484 kb on + strand, within ECD_01072 at 1135.587 kb on + strand, within ECD_01072 at 1135.675 kb on + strand, within ECD_01072 at 1135.774 kb on + strand, within ECD_01072 at 1135.774 kb on + strand, within ECD_01072 at 1135.803 kb on + strand, within ECD_01072 at 1135.875 kb on + strand, within ECD_01072 at 1135.890 kb on + strand, within ECD_01072 at 1135.962 kb on + strand, within ECD_01072 at 1136.011 kb on + strand, within ECD_01072 at 1136.259 kb on + strand at 1136.277 kb on + strand at 1136.281 kb on + strand at 1136.289 kb on + strand at 1136.337 kb on + strand at 1136.342 kb on + strand at 1136.362 kb on + strand at 1136.362 kb on + strand at 1136.384 kb on + strand at 1137.134 kb on + strand at 1137.145 kb on + strand at 1137.145 kb on + strand at 1137.145 kb on + strand at 1137.145 kb on + strand at 1137.147 kb on + strand at 1137.147 kb on + strand at 1137.147 kb on + strand at 1137.260 kb on + strand at 1137.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,134,150 + ECD_01070 0.35 +0.5 1,134,410 + +0.5 1,134,423 + +0.1 1,134,483 + -0.0 1,134,876 + ECD_01071 0.65 -0.7 1,134,965 + ECD_01071 0.78 +0.7 1,134,965 + ECD_01071 0.78 +1.8 1,135,078 + +0.3 1,135,078 + +1.6 1,135,112 + +0.5 1,135,239 + +0.8 1,135,473 + ECD_01072 0.27 +0.3 1,135,484 + ECD_01072 0.28 +0.1 1,135,587 + ECD_01072 0.37 -1.2 1,135,675 + ECD_01072 0.44 +0.3 1,135,774 + ECD_01072 0.52 -0.3 1,135,774 + ECD_01072 0.52 +0.4 1,135,803 + ECD_01072 0.55 +0.2 1,135,875 + ECD_01072 0.61 -0.5 1,135,890 + ECD_01072 0.62 -0.5 1,135,962 + ECD_01072 0.68 -0.6 1,136,011 + ECD_01072 0.72 +0.8 1,136,259 + -0.9 1,136,277 + -0.4 1,136,281 + +0.8 1,136,289 + -1.9 1,136,337 + +1.1 1,136,342 + +2.1 1,136,362 + -0.3 1,136,362 + +0.2 1,136,384 + +0.8 1,137,134 + -1.1 1,137,145 + +0.8 1,137,145 + +1.7 1,137,145 + +0.9 1,137,145 + -1.5 1,137,147 + +0.3 1,137,147 + +2.1 1,137,147 + +0.2 1,137,260 + -0.0 1,137,295 + -0.1
Or see this region's nucleotide sequence