Strain Fitness in Escherichia coli BL21 around ECD_01066

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01065 and ECD_01066 are separated by 39 nucleotidesECD_01066 and ECD_01067 are separated by 4 nucleotidesECD_01067 and ECD_01068 are separated by 75 nucleotides ECD_01065: ECD_01065 - putative lipid II flippase, at 1,130,409 to 1,131,944 _01065 ECD_01066: ECD_01066 - export chaperone for FlgK and FlgL, at 1,131,984 to 1,132,400 _01066 ECD_01067: ECD_01067 - anti-sigma factor for FliA (sigma 28), at 1,132,405 to 1,132,698 _01067 ECD_01068: ECD_01068 - assembly protein for flagellar basal-body periplasmic P ring, at 1,132,774 to 1,133,433 _01068 Position (kb) 1131 1132 1133Strain fitness (log2 ratio) -1 0 1 2 3 4at 1131.942 kb on + strandat 1132.045 kb on - strand, within ECD_01066at 1132.125 kb on - strand, within ECD_01066at 1132.197 kb on - strand, within ECD_01066at 1132.275 kb on - strand, within ECD_01066at 1132.311 kb on - strand, within ECD_01066at 1132.401 kb on - strandat 1132.401 kb on - strandat 1132.411 kb on - strandat 1132.502 kb on - strand, within ECD_01067at 1132.693 kb on - strandat 1132.740 kb on - strandat 1132.776 kb on - strandat 1132.776 kb on - strandat 1132.784 kb on - strandat 1132.784 kb on - strandat 1132.786 kb on - strandat 1133.145 kb on - strand, within ECD_01068at 1133.162 kb on - strand, within ECD_01068at 1133.178 kb on - strand, within ECD_01068at 1133.290 kb on - strand, within ECD_01068at 1133.381 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
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1,131,942 + -0.1
1,132,045 - ECD_01066 0.15 -1.3
1,132,125 - ECD_01066 0.34 -0.1
1,132,197 - ECD_01066 0.51 +1.0
1,132,275 - ECD_01066 0.70 -0.3
1,132,311 - ECD_01066 0.78 -0.3
1,132,401 - +0.1
1,132,401 - -0.0
1,132,411 - +0.1
1,132,502 - ECD_01067 0.33 -0.1
1,132,693 - -1.3
1,132,740 - -0.6
1,132,776 - -0.4
1,132,776 - +3.8
1,132,784 - -0.3
1,132,784 - -0.4
1,132,786 - +0.1
1,133,145 - ECD_01068 0.56 -0.4
1,133,162 - ECD_01068 0.59 +2.4
1,133,178 - ECD_01068 0.61 +1.5
1,133,290 - ECD_01068 0.78 +1.5
1,133,381 - -0.3

Or see this region's nucleotide sequence