Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01005 and ECD_01006 are separated by 37 nucleotides ECD_01006 and ECD_01007 are separated by 20 nucleotides ECD_01007 and ECD_04303 are separated by 203 nucleotides ECD_04303 and ECD_01008 overlap by 68 nucleotides ECD_01008 and ECD_01009 are separated by 257 nucleotides
ECD_01005: ECD_01005 - glucose-1-phosphatase/inositol phosphatase, at 1,069,866 to 1,071,107
_01005
ECD_01006: ECD_01006 - uncharacterized protein, at 1,071,145 to 1,071,372
_01006
ECD_01007: ECD_01007 - NAD(P)H:quinone oxidoreductase, at 1,071,393 to 1,071,989
_01007
ECD_04303: ECD_04303 - KGG family protein, at 1,072,193 to 1,072,429
_04303
ECD_01008: ECD_01008 - KGG family protein, at 1,072,362 to 1,072,535
_01008
ECD_01009: ECD_01009 - pyrimidine permease, at 1,072,793 to 1,074,121
_01009
Position (kb) 1071
1072 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1070.433 kb on + strand, within ECD_01005 at 1070.584 kb on - strand, within ECD_01005 at 1070.946 kb on + strand, within ECD_01005 at 1070.946 kb on + strand, within ECD_01005 at 1070.975 kb on + strand, within ECD_01005 at 1071.194 kb on - strand, within ECD_01006 at 1071.194 kb on - strand, within ECD_01006 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.618 kb on - strand, within ECD_01007 at 1071.621 kb on - strand, within ECD_01007 at 1071.679 kb on + strand, within ECD_01007 at 1072.010 kb on - strand at 1072.170 kb on + strand at 1072.324 kb on + strand, within ECD_04303 at 1072.340 kb on + strand, within ECD_04303 at 1072.341 kb on - strand, within ECD_04303 at 1072.628 kb on + strand at 1072.745 kb on + strand at 1072.745 kb on + strand at 1072.964 kb on - strand, within ECD_01009
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 1,070,433 + ECD_01005 0.46 +1.0 1,070,584 - ECD_01005 0.58 -0.9 1,070,946 + ECD_01005 0.87 +1.9 1,070,946 + ECD_01005 0.87 +1.0 1,070,975 + ECD_01005 0.89 -1.5 1,071,194 - ECD_01006 0.21 -0.3 1,071,194 - ECD_01006 0.21 +1.9 1,071,580 - ECD_01007 0.31 +0.8 1,071,580 - ECD_01007 0.31 -0.8 1,071,580 - ECD_01007 0.31 +0.4 1,071,618 - ECD_01007 0.38 +0.9 1,071,621 - ECD_01007 0.38 +0.5 1,071,679 + ECD_01007 0.48 -0.2 1,072,010 - +0.0 1,072,170 + -1.8 1,072,324 + ECD_04303 0.55 -0.5 1,072,340 + ECD_04303 0.62 +0.1 1,072,341 - ECD_04303 0.62 +0.0 1,072,628 + +0.5 1,072,745 + +0.0 1,072,745 + +0.6 1,072,964 - ECD_01009 0.13 +1.3
Or see this region's nucleotide sequence