Strain Fitness in Escherichia coli BL21 around ECD_00970

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00968 and ECD_00969 are separated by 172 nucleotidesECD_00969 and ECD_00970 are separated by 44 nucleotidesECD_00970 and ECD_00971 are separated by 57 nucleotides ECD_00968: ECD_00968 - UPF0319 family protein, at 1,032,200 to 1,032,862 _00968 ECD_00969: ECD_00969 - putative CoA-binding protein, at 1,033,035 to 1,033,448 _00969 ECD_00970: ECD_00970 - heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein, at 1,033,493 to 1,033,810 _00970 ECD_00971: ECD_00971 - 23S rRNA m(5)C1962 methyltransferase, SAM-dependent, at 1,033,868 to 1,035,058 _00971 Position (kb) 1033 1034Strain fitness (log2 ratio) -1 0 1 2 3 4at 1032.632 kb on - strand, within ECD_00968at 1032.632 kb on - strand, within ECD_00968at 1032.633 kb on + strand, within ECD_00968at 1032.633 kb on + strand, within ECD_00968at 1032.634 kb on - strand, within ECD_00968at 1032.634 kb on - strand, within ECD_00968at 1032.974 kb on + strandat 1033.137 kb on + strand, within ECD_00969at 1033.304 kb on + strand, within ECD_00969at 1033.495 kb on - strandat 1033.593 kb on - strand, within ECD_00970at 1033.593 kb on - strand, within ECD_00970at 1033.593 kb on - strand, within ECD_00970at 1033.593 kb on - strand, within ECD_00970at 1033.842 kb on - strandat 1033.842 kb on - strandat 1033.869 kb on + strandat 1033.900 kb on - strandat 1033.915 kb on - strandat 1034.104 kb on + strand, within ECD_00971at 1034.105 kb on - strand, within ECD_00971at 1034.105 kb on - strand, within ECD_00971at 1034.203 kb on + strand, within ECD_00971at 1034.203 kb on + strand, within ECD_00971at 1034.204 kb on - strand, within ECD_00971at 1034.204 kb on - strand, within ECD_00971at 1034.370 kb on + strand, within ECD_00971at 1034.573 kb on - strand, within ECD_00971at 1034.713 kb on + strand, within ECD_00971at 1034.714 kb on - strand, within ECD_00971at 1034.714 kb on - strand, within ECD_00971at 1034.755 kb on - strand, within ECD_00971

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
remove
1,032,632 - ECD_00968 0.65 -0.6
1,032,632 - ECD_00968 0.65 -0.0
1,032,633 + ECD_00968 0.65 -0.3
1,032,633 + ECD_00968 0.65 -0.5
1,032,634 - ECD_00968 0.65 +0.1
1,032,634 - ECD_00968 0.65 -0.3
1,032,974 + +4.0
1,033,137 + ECD_00969 0.25 -0.8
1,033,304 + ECD_00969 0.65 -0.2
1,033,495 - +0.7
1,033,593 - ECD_00970 0.31 +1.7
1,033,593 - ECD_00970 0.31 +1.4
1,033,593 - ECD_00970 0.31 +1.4
1,033,593 - ECD_00970 0.31 +0.7
1,033,842 - +0.7
1,033,842 - +0.2
1,033,869 + -1.7
1,033,900 - +0.4
1,033,915 - -0.4
1,034,104 + ECD_00971 0.20 -0.2
1,034,105 - ECD_00971 0.20 +0.9
1,034,105 - ECD_00971 0.20 +0.2
1,034,203 + ECD_00971 0.28 +1.9
1,034,203 + ECD_00971 0.28 -0.7
1,034,204 - ECD_00971 0.28 +0.4
1,034,204 - ECD_00971 0.28 -1.6
1,034,370 + ECD_00971 0.42 -0.6
1,034,573 - ECD_00971 0.59 -1.4
1,034,713 + ECD_00971 0.71 -1.3
1,034,714 - ECD_00971 0.71 +0.9
1,034,714 - ECD_00971 0.71 -0.9
1,034,755 - ECD_00971 0.74 -0.5

Or see this region's nucleotide sequence