Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00748 and ECD_00749 are separated by 21 nucleotides ECD_00749 and ECD_00750 are separated by 2 nucleotides ECD_00750 and ECD_00751 overlap by 8 nucleotides ECD_00751 and ECD_00752 are separated by 1 nucleotides
ECD_00748: ECD_00748 - molybdopterin biosynthesis protein A, at 801,037 to 802,026
_00748
ECD_00749: ECD_00749 - inactive molybdopterin adenylyltransferase, at 802,048 to 802,560
_00749
ECD_00750: ECD_00750 - molybdopterin biosynthesis, protein C, at 802,563 to 803,048
_00750
ECD_00751: ECD_00751 - molybdopterin synthase, small subunit, at 803,041 to 803,286
_00751
ECD_00752: ECD_00752 - molybdopterin synthase, large subunit, at 803,288 to 803,740
_00752
Position (kb) 802
803 Strain fitness (log2 ratio) -2
-1
0
1
2 at 801.070 kb on - strand at 801.079 kb on + strand at 801.109 kb on - strand at 801.124 kb on + strand at 801.343 kb on + strand, within ECD_00748 at 801.388 kb on - strand, within ECD_00748 at 801.388 kb on - strand, within ECD_00748 at 801.412 kb on - strand, within ECD_00748 at 801.439 kb on - strand, within ECD_00748 at 801.648 kb on + strand, within ECD_00748 at 801.649 kb on - strand, within ECD_00748 at 801.686 kb on + strand, within ECD_00748 at 802.012 kb on + strand at 802.013 kb on - strand at 802.216 kb on - strand, within ECD_00749 at 802.257 kb on - strand, within ECD_00749 at 802.480 kb on - strand, within ECD_00749 at 802.558 kb on + strand at 802.562 kb on + strand at 802.562 kb on + strand at 802.694 kb on + strand, within ECD_00750 at 802.694 kb on + strand, within ECD_00750 at 802.723 kb on + strand, within ECD_00750 at 802.857 kb on - strand, within ECD_00750 at 802.867 kb on + strand, within ECD_00750 at 802.941 kb on + strand, within ECD_00750 at 802.942 kb on - strand, within ECD_00750 at 803.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 801,070 - -0.8 801,079 + +1.3 801,109 - -0.5 801,124 + -0.7 801,343 + ECD_00748 0.31 +0.6 801,388 - ECD_00748 0.35 +2.3 801,388 - ECD_00748 0.35 +0.3 801,412 - ECD_00748 0.38 -1.7 801,439 - ECD_00748 0.41 -1.0 801,648 + ECD_00748 0.62 +0.9 801,649 - ECD_00748 0.62 -1.1 801,686 + ECD_00748 0.66 -0.5 802,012 + +0.2 802,013 - -0.2 802,216 - ECD_00749 0.33 -1.3 802,257 - ECD_00749 0.41 +1.2 802,480 - ECD_00749 0.84 -0.9 802,558 + -0.1 802,562 + +1.9 802,562 + +0.8 802,694 + ECD_00750 0.27 +0.3 802,694 + ECD_00750 0.27 +0.8 802,723 + ECD_00750 0.33 -0.6 802,857 - ECD_00750 0.60 -0.1 802,867 + ECD_00750 0.63 +0.3 802,941 + ECD_00750 0.78 +1.0 802,942 - ECD_00750 0.78 -2.3 803,284 + -0.4
Or see this region's nucleotide sequence