Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00650 and ECD_00651 are separated by 215 nucleotides ECD_00651 and ECD_00652 overlap by 4 nucleotides ECD_00652 and ECD_00653 overlap by 8 nucleotides ECD_00653 and ECD_00654 are separated by 8 nucleotides
ECD_00650: ECD_00650 - hypothetical protein, at 680,457 to 680,714
_00650
ECD_00651: ECD_00651 - response regulator in two-component regulatory system with KdpD, at 680,930 to 681,607
_00651
ECD_00652: ECD_00652 - fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein, at 681,604 to 684,288
_00652
ECD_00653: ECD_00653 - potassium translocating ATPase, subunit C, at 684,281 to 684,853
_00653
ECD_00654: ECD_00654 - potassium translocating ATPase, subunit B, at 684,862 to 686,910
_00654
Position (kb) 681
682
683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 681.308 kb on - strand, within ECD_00651 at 681.315 kb on + strand, within ECD_00651 at 681.461 kb on - strand, within ECD_00651 at 681.476 kb on - strand, within ECD_00651 at 681.716 kb on - strand at 681.716 kb on - strand at 681.716 kb on - strand at 681.716 kb on - strand at 681.716 kb on - strand at 681.795 kb on + strand at 681.860 kb on - strand at 682.126 kb on + strand, within ECD_00652 at 682.264 kb on + strand, within ECD_00652 at 682.265 kb on - strand, within ECD_00652 at 682.386 kb on + strand, within ECD_00652 at 682.463 kb on + strand, within ECD_00652 at 682.620 kb on + strand, within ECD_00652 at 682.742 kb on + strand, within ECD_00652 at 682.744 kb on + strand, within ECD_00652 at 682.744 kb on + strand, within ECD_00652 at 682.744 kb on + strand, within ECD_00652 at 682.859 kb on + strand, within ECD_00652 at 682.860 kb on - strand, within ECD_00652 at 682.995 kb on - strand, within ECD_00652 at 683.048 kb on - strand, within ECD_00652 at 683.435 kb on + strand, within ECD_00652 at 683.436 kb on - strand, within ECD_00652 at 683.436 kb on - strand, within ECD_00652 at 683.525 kb on - strand, within ECD_00652 at 683.525 kb on - strand, within ECD_00652 at 683.525 kb on - strand, within ECD_00652 at 683.525 kb on - strand, within ECD_00652 at 683.700 kb on - strand, within ECD_00652 at 683.700 kb on - strand, within ECD_00652 at 683.758 kb on + strand, within ECD_00652 at 683.759 kb on - strand, within ECD_00652 at 683.804 kb on - strand, within ECD_00652 at 683.946 kb on + strand, within ECD_00652 at 683.968 kb on + strand, within ECD_00652 at 684.127 kb on - strand at 684.272 kb on - strand at 684.272 kb on - strand at 684.344 kb on - strand, within ECD_00653 at 684.461 kb on - strand, within ECD_00653 at 684.461 kb on - strand, within ECD_00653 at 684.625 kb on - strand, within ECD_00653 at 684.820 kb on + strand at 684.890 kb on - strand at 684.955 kb on - strand at 684.989 kb on + strand at 685.003 kb on + strand at 685.004 kb on - strand at 685.252 kb on - strand, within ECD_00654
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 681,308 - ECD_00651 0.56 -1.5 681,315 + ECD_00651 0.57 -1.7 681,461 - ECD_00651 0.78 -1.0 681,476 - ECD_00651 0.81 -1.1 681,716 - -0.7 681,716 - +0.9 681,716 - -0.9 681,716 - +0.4 681,716 - +0.9 681,795 + -1.3 681,860 - -0.8 682,126 + ECD_00652 0.19 -0.9 682,264 + ECD_00652 0.25 -0.4 682,265 - ECD_00652 0.25 -0.9 682,386 + ECD_00652 0.29 -0.5 682,463 + ECD_00652 0.32 +0.3 682,620 + ECD_00652 0.38 -0.2 682,742 + ECD_00652 0.42 -0.4 682,744 + ECD_00652 0.42 -0.9 682,744 + ECD_00652 0.42 -0.5 682,744 + ECD_00652 0.42 +0.8 682,859 + ECD_00652 0.47 -0.2 682,860 - ECD_00652 0.47 +0.8 682,995 - ECD_00652 0.52 +0.9 683,048 - ECD_00652 0.54 +1.5 683,435 + ECD_00652 0.68 -1.0 683,436 - ECD_00652 0.68 -3.5 683,436 - ECD_00652 0.68 -2.0 683,525 - ECD_00652 0.72 +0.5 683,525 - ECD_00652 0.72 -0.7 683,525 - ECD_00652 0.72 +1.5 683,525 - ECD_00652 0.72 +0.6 683,700 - ECD_00652 0.78 +1.6 683,700 - ECD_00652 0.78 +0.4 683,758 + ECD_00652 0.80 -1.3 683,759 - ECD_00652 0.80 -0.2 683,804 - ECD_00652 0.82 +0.3 683,946 + ECD_00652 0.87 +0.8 683,968 + ECD_00652 0.88 -0.4 684,127 - +1.3 684,272 - +0.2 684,272 - +1.1 684,344 - ECD_00653 0.11 -0.1 684,461 - ECD_00653 0.31 +0.4 684,461 - ECD_00653 0.31 +1.2 684,625 - ECD_00653 0.60 -0.3 684,820 + -0.9 684,890 - -0.9 684,955 - +0.7 684,989 + -0.9 685,003 + +1.8 685,004 - +0.8 685,252 - ECD_00654 0.19 -1.4
Or see this region's nucleotide sequence