Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00647 and ECD_00648 are separated by 348 nucleotides ECD_00648 and ECD_00649 overlap by 4 nucleotides
ECD_00647: ECD_00647 - hypothetical protein, at 675,821 to 676,471
_00647
ECD_00648: ECD_00648 - putrescine/proton symporter: putrescine/ornithine antiporter, at 676,820 to 678,139
_00648
ECD_00649: ECD_00649 - ornithine decarboxylase isozyme, inducible, at 678,136 to 680,334
_00649
Position (kb) 676
677
678
679 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 676.764 kb on - strand at 676.866 kb on + strand at 676.866 kb on + strand at 676.946 kb on - strand at 676.946 kb on - strand at 676.948 kb on - strand at 677.218 kb on - strand, within ECD_00648 at 677.240 kb on - strand, within ECD_00648 at 677.318 kb on - strand, within ECD_00648 at 677.387 kb on - strand, within ECD_00648 at 677.427 kb on + strand, within ECD_00648 at 677.428 kb on - strand, within ECD_00648 at 677.460 kb on - strand, within ECD_00648 at 677.477 kb on - strand, within ECD_00648 at 677.477 kb on - strand, within ECD_00648 at 677.477 kb on - strand, within ECD_00648 at 677.495 kb on + strand, within ECD_00648 at 677.666 kb on - strand, within ECD_00648 at 677.735 kb on - strand, within ECD_00648 at 677.735 kb on - strand, within ECD_00648 at 677.828 kb on - strand, within ECD_00648 at 677.870 kb on - strand, within ECD_00648 at 677.872 kb on - strand, within ECD_00648 at 677.872 kb on - strand, within ECD_00648 at 677.872 kb on - strand, within ECD_00648 at 677.990 kb on + strand, within ECD_00648 at 678.014 kb on - strand at 678.093 kb on - strand at 678.192 kb on - strand at 678.192 kb on - strand at 678.208 kb on - strand at 678.208 kb on - strand at 678.208 kb on - strand at 678.231 kb on - strand at 678.231 kb on - strand at 678.231 kb on - strand at 678.357 kb on - strand, within ECD_00649 at 678.432 kb on - strand, within ECD_00649 at 678.432 kb on - strand, within ECD_00649 at 678.438 kb on - strand, within ECD_00649 at 678.575 kb on + strand, within ECD_00649 at 678.596 kb on + strand, within ECD_00649 at 678.806 kb on + strand, within ECD_00649 at 678.829 kb on - strand, within ECD_00649 at 678.962 kb on + strand, within ECD_00649 at 678.978 kb on + strand, within ECD_00649 at 679.012 kb on - strand, within ECD_00649 at 679.057 kb on + strand, within ECD_00649 at 679.058 kb on - strand, within ECD_00649 at 679.058 kb on - strand, within ECD_00649 at 679.077 kb on + strand, within ECD_00649 at 679.080 kb on + strand, within ECD_00649
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 676,764 - -1.5 676,866 + -1.2 676,866 + -1.7 676,946 - -1.2 676,946 - -0.4 676,948 - -0.0 677,218 - ECD_00648 0.30 -1.2 677,240 - ECD_00648 0.32 -2.4 677,318 - ECD_00648 0.38 -1.9 677,387 - ECD_00648 0.43 +1.3 677,427 + ECD_00648 0.46 -2.3 677,428 - ECD_00648 0.46 -0.9 677,460 - ECD_00648 0.48 -1.2 677,477 - ECD_00648 0.50 -1.2 677,477 - ECD_00648 0.50 +1.5 677,477 - ECD_00648 0.50 -0.3 677,495 + ECD_00648 0.51 -0.4 677,666 - ECD_00648 0.64 -1.1 677,735 - ECD_00648 0.69 -0.0 677,735 - ECD_00648 0.69 +0.5 677,828 - ECD_00648 0.76 +0.3 677,870 - ECD_00648 0.80 -0.9 677,872 - ECD_00648 0.80 -1.5 677,872 - ECD_00648 0.80 +0.0 677,872 - ECD_00648 0.80 +0.2 677,990 + ECD_00648 0.89 -0.9 678,014 - +1.3 678,093 - -0.5 678,192 - +0.9 678,192 - +0.6 678,208 - -0.3 678,208 - +1.5 678,208 - +0.3 678,231 - -1.3 678,231 - -1.7 678,231 - -0.3 678,357 - ECD_00649 0.10 +0.3 678,432 - ECD_00649 0.13 -2.2 678,432 - ECD_00649 0.13 -0.1 678,438 - ECD_00649 0.14 -1.2 678,575 + ECD_00649 0.20 -1.5 678,596 + ECD_00649 0.21 -2.8 678,806 + ECD_00649 0.30 -1.7 678,829 - ECD_00649 0.32 -1.2 678,962 + ECD_00649 0.38 -0.7 678,978 + ECD_00649 0.38 -1.0 679,012 - ECD_00649 0.40 -1.0 679,057 + ECD_00649 0.42 -1.7 679,058 - ECD_00649 0.42 -0.4 679,058 - ECD_00649 0.42 -0.8 679,077 + ECD_00649 0.43 -2.2 679,080 + ECD_00649 0.43 -0.2
Or see this region's nucleotide sequence