Strain Fitness in Escherichia coli BL21 around ECD_00617

Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00616 and ECD_00617 are separated by 83 nucleotidesECD_00617 and ECD_00619 are separated by 536 nucleotides ECD_00616: ECD_00616 - Hsp70 family chaperone Hsc62; RpoD-binding transcription inhibitor, at 639,288 to 640,958 _00616 ECD_00617: ECD_00617 - ribonucleoside hydrolase 1, at 641,042 to 641,977 _00617 ECD_00619: ECD_00619 - IS150 hypothetical protein, at 642,514 to 643,035 _00619 Position (kb) 641 642Strain fitness (log2 ratio) -2 -1 0 1at 640.258 kb on + strand, within ECD_00616at 640.259 kb on - strand, within ECD_00616at 640.259 kb on - strand, within ECD_00616at 640.476 kb on - strand, within ECD_00616at 640.666 kb on - strand, within ECD_00616at 641.296 kb on + strand, within ECD_00617at 641.476 kb on - strand, within ECD_00617at 641.480 kb on - strand, within ECD_00617at 641.518 kb on + strand, within ECD_00617at 641.593 kb on + strand, within ECD_00617at 641.841 kb on - strand, within ECD_00617at 641.878 kb on + strand, within ECD_00617at 641.879 kb on - strand, within ECD_00617at 641.921 kb on + strandat 642.027 kb on + strandat 642.027 kb on + strandat 642.096 kb on + strandat 642.364 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
remove
640,258 + ECD_00616 0.58 -0.6
640,259 - ECD_00616 0.58 +0.6
640,259 - ECD_00616 0.58 -1.9
640,476 - ECD_00616 0.71 -1.4
640,666 - ECD_00616 0.82 -0.7
641,296 + ECD_00617 0.27 -1.7
641,476 - ECD_00617 0.46 -1.6
641,480 - ECD_00617 0.47 -1.5
641,518 + ECD_00617 0.51 -1.5
641,593 + ECD_00617 0.59 -0.8
641,841 - ECD_00617 0.85 -0.4
641,878 + ECD_00617 0.89 -0.7
641,879 - ECD_00617 0.89 -0.5
641,921 + +0.4
642,027 + -1.5
642,027 + +0.1
642,096 + -1.6
642,364 + +0.2

Or see this region's nucleotide sequence