Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00437 and ECD_00438 are separated by 124 nucleotides ECD_00438 and ECD_00439 are separated by 0 nucleotides ECD_00439 and ECD_00440 overlap by 4 nucleotides ECD_00440 and ECD_00441 are separated by 145 nucleotides ECD_00441 and ECD_00442 overlap by 14 nucleotides
ECD_00437: ECD_00437 - putative amino acid transporter, at 481,723 to 483,015
_00437
ECD_00438: ECD_00438 - copper-responsive regulon transcriptional regulator, at 483,140 to 483,547
_00438
ECD_00439: ECD_00439 - inner membrane protein; stimulator of the QmcA suppressor of ftsH-htpX, at 483,548 to 484,006
_00439
ECD_00440: ECD_00440 - PHB domain membrane-anchored putative protease, at 484,003 to 484,920
_00440
ECD_00441: ECD_00441 - iron export ABC transporter ATPase; peroxide resistance protein, at 485,066 to 485,743
_00441
ECD_00442: ECD_00442 - iron export ABC transporter permease; peroxide resistance protein, at 485,730 to 486,509
_00442
Position (kb) 484
485 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 483.012 kb on - strand at 483.042 kb on + strand at 483.045 kb on + strand at 483.045 kb on + strand at 483.156 kb on + strand at 483.156 kb on + strand at 483.198 kb on - strand, within ECD_00438 at 483.568 kb on + strand at 483.572 kb on + strand at 483.573 kb on - strand at 483.573 kb on - strand at 483.749 kb on - strand, within ECD_00439 at 483.916 kb on - strand, within ECD_00439 at 483.916 kb on - strand, within ECD_00439 at 483.992 kb on + strand at 483.995 kb on + strand at 484.164 kb on - strand, within ECD_00440 at 484.180 kb on - strand, within ECD_00440 at 484.368 kb on - strand, within ECD_00440 at 484.416 kb on + strand, within ECD_00440 at 484.417 kb on - strand, within ECD_00440 at 484.417 kb on - strand, within ECD_00440 at 484.453 kb on - strand, within ECD_00440 at 484.578 kb on + strand, within ECD_00440 at 484.579 kb on - strand, within ECD_00440 at 484.626 kb on - strand, within ECD_00440 at 484.741 kb on - strand, within ECD_00440 at 485.286 kb on + strand, within ECD_00441 at 485.287 kb on - strand, within ECD_00441 at 485.355 kb on + strand, within ECD_00441 at 485.742 kb on - strand at 485.797 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 483,012 - -2.7 483,042 + -0.2 483,045 + +0.3 483,045 + -0.2 483,156 + -0.1 483,156 + +0.5 483,198 - ECD_00438 0.14 -2.0 483,568 + -0.6 483,572 + -2.3 483,573 - -1.4 483,573 - +0.1 483,749 - ECD_00439 0.44 -1.8 483,916 - ECD_00439 0.80 +0.8 483,916 - ECD_00439 0.80 -0.8 483,992 + -1.2 483,995 + -0.5 484,164 - ECD_00440 0.18 +0.1 484,180 - ECD_00440 0.19 +0.0 484,368 - ECD_00440 0.40 +0.9 484,416 + ECD_00440 0.45 -1.2 484,417 - ECD_00440 0.45 +0.3 484,417 - ECD_00440 0.45 +0.9 484,453 - ECD_00440 0.49 -0.8 484,578 + ECD_00440 0.63 -0.6 484,579 - ECD_00440 0.63 -1.3 484,626 - ECD_00440 0.68 -0.4 484,741 - ECD_00440 0.80 -1.0 485,286 + ECD_00441 0.32 -2.8 485,287 - ECD_00441 0.33 -2.1 485,355 + ECD_00441 0.43 -0.8 485,742 - -2.2 485,797 + +0.7
Or see this region's nucleotide sequence