Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00416 and ECD_00417 are separated by 211 nucleotides ECD_00417 and ECD_00418 are separated by 13 nucleotides ECD_00418 and ECD_00419 are separated by 69 nucleotides ECD_00419 and ECD_00420 are separated by 152 nucleotides ECD_00420 and ECD_00421 are separated by 128 nucleotides
ECD_00416: ECD_00416 - mechanosensitive channel protein, intermediate conductance, K+ regulated, at 455,582 to 458,944
_00416
ECD_00417: ECD_00417 - DUF2496 family protein, at 459,156 to 459,317
_00417
ECD_00418: ECD_00418 - primosomal replication protein N'', at 459,331 to 459,858
_00418
ECD_00419: ECD_00419 - DUF454 family inner membrane protein, at 459,928 to 460,305
_00419
ECD_00420: ECD_00420 - adenine phosphoribosyltransferase, at 460,458 to 461,009
_00420
ECD_00421: ECD_00421 - DNA polymerase III/DNA elongation factor III, tau and gamma subunits, at 461,138 to 463,069
_00421
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.965 kb on + strand at 459.059 kb on + strand at 459.076 kb on - strand at 459.127 kb on - strand at 459.137 kb on + strand at 459.138 kb on - strand at 459.151 kb on - strand at 459.184 kb on - strand, within ECD_00417 at 459.207 kb on + strand, within ECD_00417 at 459.207 kb on + strand, within ECD_00417 at 459.208 kb on - strand, within ECD_00417 at 459.208 kb on - strand, within ECD_00417 at 459.317 kb on + strand at 459.317 kb on + strand at 459.318 kb on - strand at 459.318 kb on - strand at 459.318 kb on - strand at 459.318 kb on - strand at 459.318 kb on - strand at 459.522 kb on + strand, within ECD_00418 at 459.522 kb on + strand, within ECD_00418 at 459.528 kb on + strand, within ECD_00418 at 459.889 kb on - strand at 459.928 kb on - strand at 459.944 kb on + strand at 459.945 kb on - strand at 460.103 kb on - strand, within ECD_00419 at 460.103 kb on - strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.106 kb on + strand, within ECD_00419 at 460.258 kb on + strand, within ECD_00419 at 460.258 kb on + strand, within ECD_00419 at 460.258 kb on + strand, within ECD_00419 at 460.259 kb on - strand, within ECD_00419 at 460.259 kb on - strand, within ECD_00419 at 460.261 kb on - strand, within ECD_00419 at 460.261 kb on - strand, within ECD_00419 at 460.261 kb on - strand, within ECD_00419 at 460.408 kb on + strand at 460.451 kb on + strand at 460.451 kb on + strand at 460.452 kb on - strand at 460.452 kb on - strand at 460.457 kb on + strand at 460.457 kb on + strand at 460.458 kb on - strand at 460.496 kb on + strand at 460.612 kb on - strand, within ECD_00420 at 460.755 kb on + strand, within ECD_00420 at 460.980 kb on + strand at 460.980 kb on + strand at 460.981 kb on - strand at 460.981 kb on - strand at 461.007 kb on + strand at 461.008 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 458,965 + -1.7 459,059 + -1.3 459,076 - +0.1 459,127 - -0.3 459,137 + -2.4 459,138 - +0.7 459,151 - +0.4 459,184 - ECD_00417 0.17 +0.1 459,207 + ECD_00417 0.31 -0.4 459,207 + ECD_00417 0.31 +1.4 459,208 - ECD_00417 0.32 +1.5 459,208 - ECD_00417 0.32 +2.1 459,317 + +0.6 459,317 + -0.6 459,318 - +1.5 459,318 - +1.9 459,318 - +0.9 459,318 - +2.3 459,318 - +1.6 459,522 + ECD_00418 0.36 +0.4 459,522 + ECD_00418 0.36 -0.4 459,528 + ECD_00418 0.37 +0.9 459,889 - +0.8 459,928 - +1.1 459,944 + +0.6 459,945 - +0.6 460,103 - ECD_00419 0.46 -0.7 460,103 - ECD_00419 0.46 -0.1 460,106 + ECD_00419 0.47 -1.4 460,106 + ECD_00419 0.47 +1.6 460,106 + ECD_00419 0.47 -0.7 460,106 + ECD_00419 0.47 -1.5 460,106 + ECD_00419 0.47 +1.5 460,106 + ECD_00419 0.47 -1.4 460,258 + ECD_00419 0.87 +0.7 460,258 + ECD_00419 0.87 +0.4 460,258 + ECD_00419 0.87 +1.0 460,259 - ECD_00419 0.88 +0.7 460,259 - ECD_00419 0.88 +0.5 460,261 - ECD_00419 0.88 +0.6 460,261 - ECD_00419 0.88 +0.1 460,261 - ECD_00419 0.88 -1.1 460,408 + -0.1 460,451 + +0.2 460,451 + -0.8 460,452 - +1.4 460,452 - -0.0 460,457 + -0.9 460,457 + +1.8 460,458 - +0.5 460,496 + -0.7 460,612 - ECD_00420 0.28 +1.5 460,755 + ECD_00420 0.54 -0.1 460,980 + +0.7 460,980 + +0.4 460,981 - +0.1 460,981 - -0.4 461,007 + +1.2 461,008 - -2.0
Or see this region's nucleotide sequence