Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00290 and ECD_00291 overlap by 11 nucleotides ECD_00291 and ECD_00292 are separated by 336 nucleotides
ECD_00290: ECD_00290 - cytosine transporter, at 324,457 to 325,716
_00290
ECD_00291: ECD_00291 - cytosine/isoguanine deaminase, at 325,706 to 326,989
_00291
ECD_00292: ECD_00292 - transcriptional activator of cyn operon; autorepressor, at 327,326 to 328,225
_00292
Position (kb) 325
326
327 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 324.841 kb on - strand, within ECD_00290 at 324.867 kb on - strand, within ECD_00290 at 325.001 kb on + strand, within ECD_00290 at 325.282 kb on - strand, within ECD_00290 at 325.310 kb on - strand, within ECD_00290 at 325.408 kb on + strand, within ECD_00290 at 325.408 kb on + strand, within ECD_00290 at 325.408 kb on + strand, within ECD_00290 at 325.408 kb on + strand, within ECD_00290 at 325.411 kb on - strand, within ECD_00290 at 325.449 kb on + strand, within ECD_00290 at 325.449 kb on + strand, within ECD_00290 at 325.450 kb on - strand, within ECD_00290 at 325.450 kb on - strand, within ECD_00290 at 325.483 kb on + strand, within ECD_00290 at 325.622 kb on + strand at 325.639 kb on + strand at 325.830 kb on + strand at 325.892 kb on - strand, within ECD_00291 at 326.226 kb on + strand, within ECD_00291 at 326.244 kb on + strand, within ECD_00291 at 326.283 kb on - strand, within ECD_00291 at 326.302 kb on + strand, within ECD_00291 at 326.466 kb on - strand, within ECD_00291 at 326.477 kb on + strand, within ECD_00291 at 326.478 kb on - strand, within ECD_00291 at 326.478 kb on - strand, within ECD_00291 at 326.479 kb on + strand, within ECD_00291 at 326.479 kb on + strand, within ECD_00291 at 326.747 kb on - strand, within ECD_00291 at 326.949 kb on + strand at 326.950 kb on - strand at 327.011 kb on + strand at 327.071 kb on - strand at 327.212 kb on - strand at 327.255 kb on - strand at 327.467 kb on - strand, within ECD_00292 at 327.587 kb on + strand, within ECD_00292 at 327.726 kb on - strand, within ECD_00292 at 327.923 kb on - strand, within ECD_00292
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 324,841 - ECD_00290 0.30 -1.0 324,867 - ECD_00290 0.33 -1.9 325,001 + ECD_00290 0.43 +0.0 325,282 - ECD_00290 0.65 -1.3 325,310 - ECD_00290 0.68 -0.9 325,408 + ECD_00290 0.75 -0.5 325,408 + ECD_00290 0.75 +0.3 325,408 + ECD_00290 0.75 +0.1 325,408 + ECD_00290 0.75 -0.6 325,411 - ECD_00290 0.76 -1.9 325,449 + ECD_00290 0.79 -0.1 325,449 + ECD_00290 0.79 -0.4 325,450 - ECD_00290 0.79 +0.6 325,450 - ECD_00290 0.79 -0.4 325,483 + ECD_00290 0.81 +0.1 325,622 + -0.1 325,639 + -0.4 325,830 + -0.1 325,892 - ECD_00291 0.14 -0.7 326,226 + ECD_00291 0.40 -0.5 326,244 + ECD_00291 0.42 -1.0 326,283 - ECD_00291 0.45 -3.9 326,302 + ECD_00291 0.46 -2.7 326,466 - ECD_00291 0.59 -1.5 326,477 + ECD_00291 0.60 -0.6 326,478 - ECD_00291 0.60 -2.8 326,478 - ECD_00291 0.60 -1.0 326,479 + ECD_00291 0.60 -0.8 326,479 + ECD_00291 0.60 -2.3 326,747 - ECD_00291 0.81 -3.1 326,949 + -0.3 326,950 - -0.2 327,011 + -0.5 327,071 - -1.3 327,212 - -0.8 327,255 - -0.0 327,467 - ECD_00292 0.16 +0.1 327,587 + ECD_00292 0.29 -0.5 327,726 - ECD_00292 0.44 -0.5 327,923 - ECD_00292 0.66 +0.8
Or see this region's nucleotide sequence