Experiment: Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00058 and ECD_00059 are separated by 254 nucleotides ECD_00059 and ECD_00060 are separated by 116 nucleotides ECD_00060 and ECD_00061 are separated by 11 nucleotides
ECD_00058: ECD_00058 - LPS assembly OM complex LptDE, beta-barrel component, at 58,951 to 61,305
_00058
ECD_00059: ECD_00059 - membrane-anchored DnaK co-chaperone, DNA-binding protein, at 61,560 to 62,375
_00059
ECD_00060: ECD_00060 - dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent, at 62,492 to 63,151
_00060
ECD_00061: ECD_00061 - RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase, at 63,163 to 66,069
_00061
Position (kb) 61
62
63 Strain fitness (log2 ratio) -2
-1
0
1 at 61.317 kb on - strand at 61.317 kb on - strand at 61.364 kb on - strand at 61.364 kb on - strand at 61.364 kb on - strand at 61.369 kb on - strand at 61.369 kb on - strand at 61.392 kb on + strand at 61.393 kb on - strand at 61.393 kb on - strand at 61.444 kb on + strand at 61.444 kb on + strand at 61.445 kb on - strand at 61.445 kb on - strand at 61.511 kb on + strand at 61.511 kb on + strand at 61.511 kb on + strand at 61.513 kb on + strand at 61.513 kb on + strand at 61.525 kb on + strand at 61.557 kb on + strand at 61.557 kb on + strand at 61.557 kb on + strand at 61.557 kb on + strand at 61.558 kb on - strand at 61.559 kb on + strand at 61.559 kb on + strand at 61.567 kb on - strand at 61.633 kb on + strand at 61.642 kb on + strand, within ECD_00059 at 61.642 kb on + strand, within ECD_00059 at 61.643 kb on - strand, within ECD_00059 at 61.677 kb on - strand, within ECD_00059 at 61.753 kb on + strand, within ECD_00059 at 61.787 kb on + strand, within ECD_00059 at 61.949 kb on + strand, within ECD_00059 at 62.022 kb on + strand, within ECD_00059 at 62.022 kb on + strand, within ECD_00059 at 62.180 kb on + strand, within ECD_00059 at 62.181 kb on - strand, within ECD_00059 at 62.237 kb on + strand, within ECD_00059 at 62.237 kb on + strand, within ECD_00059 at 62.238 kb on - strand, within ECD_00059 at 62.265 kb on - strand, within ECD_00059 at 62.340 kb on + strand at 62.340 kb on + strand at 62.341 kb on - strand at 62.369 kb on + strand at 62.388 kb on - strand at 62.513 kb on - strand at 62.521 kb on + strand at 62.521 kb on + strand at 62.521 kb on + strand at 62.522 kb on - strand at 62.525 kb on - strand at 62.568 kb on - strand, within ECD_00060 at 62.611 kb on - strand, within ECD_00060 at 62.650 kb on + strand, within ECD_00060 at 62.650 kb on + strand, within ECD_00060 at 62.651 kb on - strand, within ECD_00060 at 62.722 kb on - strand, within ECD_00060 at 62.736 kb on + strand, within ECD_00060 at 62.736 kb on + strand, within ECD_00060 at 62.937 kb on - strand, within ECD_00060 at 63.082 kb on + strand, within ECD_00060 at 63.082 kb on + strand, within ECD_00060 at 63.083 kb on - strand, within ECD_00060 at 63.083 kb on - strand, within ECD_00060 at 63.083 kb on - strand, within ECD_00060 at 63.083 kb on - strand, within ECD_00060 at 63.083 kb on - strand, within ECD_00060 at 63.083 kb on - strand, within ECD_00060 at 63.085 kb on + strand, within ECD_00060 at 63.085 kb on + strand, within ECD_00060 at 63.086 kb on - strand at 63.086 kb on - strand at 63.086 kb on - strand at 63.086 kb on - strand at 63.135 kb on + strand at 63.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus Tiebrius_1 remove 61,317 - -0.1 61,317 - +0.5 61,364 - +0.1 61,364 - +0.2 61,364 - +0.6 61,369 - +0.4 61,369 - +0.9 61,392 + +0.3 61,393 - +0.1 61,393 - +0.7 61,444 + +0.6 61,444 + +0.5 61,445 - -0.2 61,445 - -0.7 61,511 + +0.3 61,511 + +0.3 61,511 + +1.5 61,513 + +0.0 61,513 + +1.0 61,525 + +0.2 61,557 + +0.5 61,557 + +0.5 61,557 + +0.0 61,557 + +0.5 61,558 - -2.3 61,559 + +0.5 61,559 + +0.5 61,567 - -1.9 61,633 + -0.4 61,642 + ECD_00059 0.10 +0.5 61,642 + ECD_00059 0.10 +0.1 61,643 - ECD_00059 0.10 +0.4 61,677 - ECD_00059 0.14 -2.4 61,753 + ECD_00059 0.24 -0.3 61,787 + ECD_00059 0.28 -0.4 61,949 + ECD_00059 0.48 +0.4 62,022 + ECD_00059 0.57 +0.1 62,022 + ECD_00059 0.57 -0.1 62,180 + ECD_00059 0.76 -0.3 62,181 - ECD_00059 0.76 -1.8 62,237 + ECD_00059 0.83 +0.5 62,237 + ECD_00059 0.83 -0.2 62,238 - ECD_00059 0.83 -1.1 62,265 - ECD_00059 0.86 -0.8 62,340 + -0.0 62,340 + -0.0 62,341 - -2.0 62,369 + +0.3 62,388 - -1.3 62,513 - +0.3 62,521 + -1.0 62,521 + -0.6 62,521 + -0.7 62,522 - +0.2 62,525 - -0.2 62,568 - ECD_00060 0.12 -0.6 62,611 - ECD_00060 0.18 -0.3 62,650 + ECD_00060 0.24 -2.4 62,650 + ECD_00060 0.24 -1.4 62,651 - ECD_00060 0.24 -0.1 62,722 - ECD_00060 0.35 +0.2 62,736 + ECD_00060 0.37 +0.3 62,736 + ECD_00060 0.37 -0.7 62,937 - ECD_00060 0.67 +0.2 63,082 + ECD_00060 0.89 -1.6 63,082 + ECD_00060 0.89 -0.5 63,083 - ECD_00060 0.90 +0.4 63,083 - ECD_00060 0.90 +0.4 63,083 - ECD_00060 0.90 +0.9 63,083 - ECD_00060 0.90 +0.4 63,083 - ECD_00060 0.90 +0.4 63,083 - ECD_00060 0.90 +0.4 63,085 + ECD_00060 0.90 -0.3 63,085 + ECD_00060 0.90 -1.3 63,086 - -0.1 63,086 - +0.8 63,086 - +0.4 63,086 - +0.4 63,135 + -2.6 63,233 - +1.1
Or see this region's nucleotide sequence