Strain Fitness in Agrobacterium fabrum C58 around Atu3049

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3048 and Atu3049 are separated by 129 nucleotidesAtu3049 and Atu3050 are separated by 136 nucleotides Atu3048: Atu3048 - oligopeptide ABC transporter permease, at 44,419 to 45,369 Atu3048 Atu3049: Atu3049 - oligopeptide ABC transporter substrate-binding protein, at 45,499 to 47,160 Atu3049 Atu3050: Atu3050 - AgaE protein, at 47,297 to 48,628 Atu3050 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1at 44.563 kb on + strand, within Atu3048at 44.563 kb on + strand, within Atu3048at 44.568 kb on + strand, within Atu3048at 44.568 kb on + strand, within Atu3048at 44.571 kb on - strand, within Atu3048at 44.578 kb on + strand, within Atu3048at 44.578 kb on + strand, within Atu3048at 44.586 kb on - strand, within Atu3048at 44.586 kb on - strand, within Atu3048at 44.609 kb on - strand, within Atu3048at 44.650 kb on + strand, within Atu3048at 44.655 kb on - strand, within Atu3048at 44.956 kb on + strand, within Atu3048at 45.009 kb on + strand, within Atu3048at 45.017 kb on - strand, within Atu3048at 45.017 kb on - strand, within Atu3048at 45.136 kb on - strand, within Atu3048at 45.190 kb on - strand, within Atu3048at 45.369 kb on - strandat 45.370 kb on + strandat 45.401 kb on + strandat 45.409 kb on - strandat 45.409 kb on - strandat 45.474 kb on - strandat 45.495 kb on + strandat 45.553 kb on + strandat 45.576 kb on + strandat 45.576 kb on + strandat 45.576 kb on + strandat 45.584 kb on - strandat 45.662 kb on + strandat 45.662 kb on + strandat 45.662 kb on + strandat 45.662 kb on + strandat 45.804 kb on + strand, within Atu3049at 45.805 kb on - strand, within Atu3049at 45.812 kb on - strand, within Atu3049at 45.812 kb on - strand, within Atu3049at 45.812 kb on - strand, within Atu3049at 45.939 kb on - strand, within Atu3049at 45.939 kb on - strand, within Atu3049at 45.949 kb on - strand, within Atu3049at 45.949 kb on - strand, within Atu3049at 45.991 kb on + strand, within Atu3049at 45.999 kb on - strand, within Atu3049at 45.999 kb on - strand, within Atu3049at 46.095 kb on - strand, within Atu3049at 46.171 kb on - strand, within Atu3049at 46.256 kb on - strand, within Atu3049at 46.334 kb on - strand, within Atu3049at 46.377 kb on - strand, within Atu3049at 46.379 kb on + strand, within Atu3049at 46.379 kb on + strand, within Atu3049at 46.379 kb on + strand, within Atu3049at 46.379 kb on + strand, within Atu3049at 46.387 kb on - strand, within Atu3049at 46.387 kb on - strand, within Atu3049at 46.393 kb on + strand, within Atu3049at 46.480 kb on - strand, within Atu3049at 46.585 kb on - strand, within Atu3049at 46.704 kb on - strand, within Atu3049at 46.706 kb on + strand, within Atu3049at 46.743 kb on + strand, within Atu3049at 46.751 kb on - strand, within Atu3049at 46.764 kb on - strand, within Atu3049at 46.918 kb on - strand, within Atu3049at 47.014 kb on + strandat 47.048 kb on - strandat 47.056 kb on - strandat 47.171 kb on + strandat 47.223 kb on - strandat 47.265 kb on - strandat 47.271 kb on + strandat 47.271 kb on + strandat 47.271 kb on + strandat 47.271 kb on + strandat 47.279 kb on - strandat 47.279 kb on - strandat 47.296 kb on - strandat 47.304 kb on + strandat 47.519 kb on + strand, within Atu3050at 47.527 kb on - strand, within Atu3050at 47.584 kb on + strand, within Atu3050at 47.617 kb on + strand, within Atu3050at 47.625 kb on - strand, within Atu3050at 47.657 kb on - strand, within Atu3050at 47.673 kb on - strand, within Atu3050at 47.851 kb on + strand, within Atu3050at 47.878 kb on + strand, within Atu3050at 47.918 kb on + strand, within Atu3050at 47.933 kb on - strand, within Atu3050at 47.943 kb on - strand, within Atu3050at 47.943 kb on - strand, within Atu3050at 47.974 kb on + strand, within Atu3050at 47.982 kb on - strand, within Atu3050at 48.043 kb on - strand, within Atu3050at 48.068 kb on + strand, within Atu3050at 48.089 kb on + strand, within Atu3050at 48.112 kb on + strand, within Atu3050

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.02 mM
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44,563 + Atu3048 0.15 -0.1
44,563 + Atu3048 0.15 -0.5
44,568 + Atu3048 0.16 -0.3
44,568 + Atu3048 0.16 -0.6
44,571 - Atu3048 0.16 -0.0
44,578 + Atu3048 0.17 -2.4
44,578 + Atu3048 0.17 -0.9
44,586 - Atu3048 0.18 -0.8
44,586 - Atu3048 0.18 -0.0
44,609 - Atu3048 0.20 +1.3
44,650 + Atu3048 0.24 -1.0
44,655 - Atu3048 0.25 -1.1
44,956 + Atu3048 0.56 -0.2
45,009 + Atu3048 0.62 -0.3
45,017 - Atu3048 0.63 -1.4
45,017 - Atu3048 0.63 +0.3
45,136 - Atu3048 0.75 -0.4
45,190 - Atu3048 0.81 +0.2
45,369 - -1.3
45,370 + -0.3
45,401 + -1.5
45,409 - +0.5
45,409 - -0.5
45,474 - -0.4
45,495 + -0.6
45,553 + -1.0
45,576 + -0.2
45,576 + -0.4
45,576 + -2.0
45,584 - +0.1
45,662 + +0.2
45,662 + -0.3
45,662 + +0.2
45,662 + -0.4
45,804 + Atu3049 0.18 -0.9
45,805 - Atu3049 0.18 -0.4
45,812 - Atu3049 0.19 -0.8
45,812 - Atu3049 0.19 -1.3
45,812 - Atu3049 0.19 -1.8
45,939 - Atu3049 0.26 -0.6
45,939 - Atu3049 0.26 -0.4
45,949 - Atu3049 0.27 -1.5
45,949 - Atu3049 0.27 +0.3
45,991 + Atu3049 0.30 +1.4
45,999 - Atu3049 0.30 +0.2
45,999 - Atu3049 0.30 +0.6
46,095 - Atu3049 0.36 +0.0
46,171 - Atu3049 0.40 -2.2
46,256 - Atu3049 0.46 +0.8
46,334 - Atu3049 0.50 -0.2
46,377 - Atu3049 0.53 -0.1
46,379 + Atu3049 0.53 +0.4
46,379 + Atu3049 0.53 +0.1
46,379 + Atu3049 0.53 -0.3
46,379 + Atu3049 0.53 -0.4
46,387 - Atu3049 0.53 -0.4
46,387 - Atu3049 0.53 -0.6
46,393 + Atu3049 0.54 -0.6
46,480 - Atu3049 0.59 +0.1
46,585 - Atu3049 0.65 +0.2
46,704 - Atu3049 0.73 +0.7
46,706 + Atu3049 0.73 +0.8
46,743 + Atu3049 0.75 -1.0
46,751 - Atu3049 0.75 +0.9
46,764 - Atu3049 0.76 -0.3
46,918 - Atu3049 0.85 +1.6
47,014 + -0.2
47,048 - +0.0
47,056 - +0.6
47,171 + -1.0
47,223 - -0.6
47,265 - +0.0
47,271 + -0.9
47,271 + -0.1
47,271 + +0.7
47,271 + -0.8
47,279 - -0.5
47,279 - +1.2
47,296 - +1.2
47,304 + -2.9
47,519 + Atu3050 0.17 -0.6
47,527 - Atu3050 0.17 -0.2
47,584 + Atu3050 0.22 -1.7
47,617 + Atu3050 0.24 -0.4
47,625 - Atu3050 0.25 +0.6
47,657 - Atu3050 0.27 -0.7
47,673 - Atu3050 0.28 -0.3
47,851 + Atu3050 0.42 -0.1
47,878 + Atu3050 0.44 +0.4
47,918 + Atu3050 0.47 -0.8
47,933 - Atu3050 0.48 -0.1
47,943 - Atu3050 0.48 -0.4
47,943 - Atu3050 0.48 +0.0
47,974 + Atu3050 0.51 +0.4
47,982 - Atu3050 0.51 -0.2
48,043 - Atu3050 0.56 +0.8
48,068 + Atu3050 0.58 -0.2
48,089 + Atu3050 0.59 -0.3
48,112 + Atu3050 0.61 -1.6

Or see this region's nucleotide sequence