Strain Fitness in Escherichia coli BW25113 around b2022
Experiment: limonene 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | limonene 5 vol% |
---|---|---|---|---|---|
remove | |||||
2,090,721 | - | hisC | b2021 | 0.28 | -0.3 |
2,090,808 | - | hisC | b2021 | 0.36 | -0.3 |
2,090,932 | + | hisC | b2021 | 0.48 | -0.4 |
2,090,932 | + | hisC | b2021 | 0.48 | -0.1 |
2,090,938 | + | hisC | b2021 | 0.48 | +0.7 |
2,091,102 | + | hisC | b2021 | 0.63 | -0.6 |
2,091,202 | - | hisC | b2021 | 0.73 | +0.3 |
2,091,202 | - | hisC | b2021 | 0.73 | -0.0 |
2,091,274 | + | hisC | b2021 | 0.80 | +0.3 |
2,091,351 | + | hisC | b2021 | 0.87 | -0.4 |
2,091,593 | - | -0.0 | |||
2,091,593 | - | +1.1 | |||
2,091,619 | - | hisB | b2022 | 0.12 | -0.7 |
2,091,659 | + | hisB | b2022 | 0.16 | -0.1 |
2,091,985 | - | hisB | b2022 | 0.46 | -0.4 |
2,092,013 | - | hisB | b2022 | 0.49 | +1.6 |
2,092,013 | - | hisB | b2022 | 0.49 | +0.4 |
2,092,070 | + | hisB | b2022 | 0.54 | +0.2 |
2,092,080 | + | hisB | b2022 | 0.55 | -1.0 |
2,092,114 | - | hisB | b2022 | 0.58 | -0.8 |
2,092,160 | + | hisB | b2022 | 0.63 | +0.2 |
2,092,171 | - | hisB | b2022 | 0.64 | +1.3 |
2,092,193 | - | hisB | b2022 | 0.66 | +0.6 |
2,092,193 | - | hisB | b2022 | 0.66 | -2.3 |
2,092,355 | + | hisB | b2022 | 0.81 | -0.4 |
2,092,355 | + | hisB | b2022 | 0.81 | -0.0 |
2,092,359 | - | hisB | b2022 | 0.81 | -0.1 |
2,092,406 | + | hisB | b2022 | 0.86 | +2.1 |
2,092,406 | + | hisB | b2022 | 0.86 | +0.4 |
2,092,412 | + | hisB | b2022 | 0.86 | +1.0 |
2,092,412 | + | hisB | b2022 | 0.86 | +0.2 |
2,092,464 | + | -0.2 | |||
2,092,533 | - | +0.3 | |||
2,092,549 | - | -0.2 | |||
2,092,752 | - | hisH | b2023 | 0.33 | +0.8 |
2,092,772 | - | hisH | b2023 | 0.36 | -0.0 |
2,092,907 | + | hisH | b2023 | 0.59 | +0.1 |
2,093,026 | + | hisH | b2023 | 0.79 | +0.7 |
2,093,026 | + | hisH | b2023 | 0.79 | +0.8 |
2,093,071 | + | hisH | b2023 | 0.87 | +0.8 |
2,093,071 | + | hisH | b2023 | 0.87 | +0.4 |
2,093,079 | - | hisH | b2023 | 0.88 | +0.4 |
2,093,079 | - | hisH | b2023 | 0.88 | -0.6 |
2,093,079 | - | hisH | b2023 | 0.88 | +0.5 |
2,093,079 | - | hisH | b2023 | 0.88 | +0.2 |
2,093,094 | - | -0.8 | |||
2,093,183 | + | -0.0 | |||
2,093,183 | + | -0.3 | |||
2,093,454 | - | hisA | b2024 | 0.41 | -0.6 |
2,093,510 | - | hisA | b2024 | 0.49 | -0.0 |
Or see this region's nucleotide sequence