Experiment: limonene 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiP and yliL are separated by 73 nucleotides yliL and rybA are separated by 11 nucleotides rybA and mntR are separated by 142 nucleotides mntR and ybiR overlap by 4 nucleotides
b0815: ybiP - predicted hydrolase, inner membrane (NCBI), at 850,237 to 851,820
ybiP
b0816: yliL - hypothetical protein (NCBI), at 851,894 to 852,163
yliL
b4416: rybA - unknown RNA (NCBI), at 852,175 to 852,263
rybA
b0817: mntR - DNA-binding transcriptional regulator of mntH (NCBI), at 852,406 to 852,873
mntR
b0818: ybiR - predicted transporter (NCBI), at 852,870 to 853,988
ybiR
Position (kb) 852
853 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10
11 at 851.458 kb on - strand, within ybiP at 851.537 kb on - strand, within ybiP at 851.537 kb on - strand, within ybiP at 851.573 kb on + strand, within ybiP at 851.579 kb on - strand, within ybiP at 851.624 kb on - strand, within ybiP at 851.644 kb on + strand, within ybiP at 851.644 kb on + strand, within ybiP at 851.647 kb on + strand, within ybiP at 851.655 kb on - strand, within ybiP at 851.662 kb on + strand at 851.693 kb on + strand at 851.702 kb on + strand at 851.718 kb on - strand at 851.718 kb on - strand at 851.755 kb on - strand at 851.871 kb on + strand at 851.874 kb on - strand at 851.875 kb on + strand at 851.875 kb on + strand at 851.969 kb on - strand, within yliL at 852.203 kb on + strand, within rybA at 852.479 kb on - strand, within mntR at 852.549 kb on + strand, within mntR at 852.549 kb on + strand, within mntR at 852.561 kb on + strand, within mntR at 852.575 kb on - strand, within mntR at 852.602 kb on - strand, within mntR at 852.902 kb on - strand at 852.951 kb on + strand at 853.057 kb on + strand, within ybiR at 853.057 kb on + strand, within ybiR at 853.175 kb on + strand, within ybiR at 853.175 kb on + strand, within ybiR at 853.183 kb on - strand, within ybiR at 853.259 kb on + strand, within ybiR at 853.285 kb on - strand, within ybiR at 853.329 kb on - strand, within ybiR at 853.329 kb on - strand, within ybiR at 853.372 kb on + strand, within ybiR at 853.397 kb on - strand, within ybiR at 853.428 kb on + strand, within ybiR at 853.428 kb on + strand, within ybiR at 853.476 kb on + strand, within ybiR at 853.481 kb on - strand, within ybiR at 853.595 kb on - strand, within ybiR at 853.597 kb on + strand, within ybiR at 853.605 kb on - strand, within ybiR at 853.605 kb on - strand, within ybiR at 853.668 kb on + strand, within ybiR at 853.668 kb on + strand, within ybiR at 853.690 kb on + strand, within ybiR at 853.697 kb on - strand, within ybiR at 853.743 kb on - strand, within ybiR at 853.756 kb on - strand, within ybiR at 853.789 kb on - strand, within ybiR at 853.808 kb on + strand, within ybiR
Per-strain Table
Position Strand Gene LocusTag Fraction limonene 5 vol% remove 851,458 - ybiP b0815 0.77 +0.9 851,537 - ybiP b0815 0.82 -0.5 851,537 - ybiP b0815 0.82 +0.2 851,573 + ybiP b0815 0.84 -0.0 851,579 - ybiP b0815 0.85 +0.1 851,624 - ybiP b0815 0.88 -0.1 851,644 + ybiP b0815 0.89 +0.8 851,644 + ybiP b0815 0.89 -0.7 851,647 + ybiP b0815 0.89 +0.6 851,655 - ybiP b0815 0.90 -0.6 851,662 + -0.2 851,693 + -0.5 851,702 + +0.2 851,718 - +0.7 851,718 - +0.1 851,755 - -0.1 851,871 + +0.6 851,874 - +0.5 851,875 + +0.9 851,875 + -0.3 851,969 - yliL b0816 0.28 -0.6 852,203 + rybA b4416 0.31 -0.3 852,479 - mntR b0817 0.16 +10.4 852,549 + mntR b0817 0.31 +10.7 852,549 + mntR b0817 0.31 +10.8 852,561 + mntR b0817 0.33 +10.8 852,575 - mntR b0817 0.36 +10.8 852,602 - mntR b0817 0.42 +10.8 852,902 - +0.9 852,951 + +0.4 853,057 + ybiR b0818 0.17 -0.6 853,057 + ybiR b0818 0.17 -0.8 853,175 + ybiR b0818 0.27 -0.2 853,175 + ybiR b0818 0.27 -0.0 853,183 - ybiR b0818 0.28 +0.7 853,259 + ybiR b0818 0.35 +0.5 853,285 - ybiR b0818 0.37 -0.5 853,329 - ybiR b0818 0.41 +0.9 853,329 - ybiR b0818 0.41 +0.1 853,372 + ybiR b0818 0.45 -0.1 853,397 - ybiR b0818 0.47 -0.0 853,428 + ybiR b0818 0.50 +0.5 853,428 + ybiR b0818 0.50 -0.1 853,476 + ybiR b0818 0.54 +0.3 853,481 - ybiR b0818 0.55 -0.5 853,595 - ybiR b0818 0.65 -0.5 853,597 + ybiR b0818 0.65 +0.3 853,605 - ybiR b0818 0.66 -1.1 853,605 - ybiR b0818 0.66 +0.1 853,668 + ybiR b0818 0.71 +1.9 853,668 + ybiR b0818 0.71 +1.3 853,690 + ybiR b0818 0.73 -0.2 853,697 - ybiR b0818 0.74 +0.4 853,743 - ybiR b0818 0.78 +0.1 853,756 - ybiR b0818 0.79 +0.5 853,789 - ybiR b0818 0.82 -0.0 853,808 + ybiR b0818 0.84 +0.2
Or see this region's nucleotide sequence