Experiment: limonene 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhO and ybhP overlap by 4 nucleotides ybhP and ybhQ are separated by 132 nucleotides ybhQ and ybhR overlap by 39 nucleotides
b0789: ybhO - cardiolipin synthase 2 (NCBI), at 821,721 to 822,962
ybhO
b0790: ybhP - predicted DNase (NCBI), at 822,959 to 823,720
ybhP
b0791: ybhQ - predicted inner membrane protein (NCBI), at 823,853 to 824,263
ybhQ
b0792: ybhR - predicted transporter subunit: membrane component of ABC superfamily (NCBI), at 824,225 to 825,331
ybhR
Position (kb) 823
824
825 Strain fitness (log2 ratio) -1
0
1 at 822.891 kb on - strand at 823.224 kb on + strand, within ybhP at 823.224 kb on + strand, within ybhP at 823.296 kb on - strand, within ybhP at 823.296 kb on - strand, within ybhP at 823.302 kb on - strand, within ybhP at 823.331 kb on + strand, within ybhP at 823.346 kb on + strand, within ybhP at 823.405 kb on + strand, within ybhP at 823.434 kb on - strand, within ybhP at 823.454 kb on - strand, within ybhP at 823.604 kb on - strand, within ybhP at 823.653 kb on - strand at 823.850 kb on + strand at 823.893 kb on - strand at 823.947 kb on + strand, within ybhQ at 823.961 kb on - strand, within ybhQ at 823.993 kb on + strand, within ybhQ at 824.064 kb on - strand, within ybhQ at 824.068 kb on + strand, within ybhQ at 824.288 kb on - strand at 824.354 kb on + strand, within ybhR at 824.354 kb on + strand, within ybhR at 824.371 kb on - strand, within ybhR at 824.371 kb on - strand, within ybhR at 824.501 kb on + strand, within ybhR at 824.559 kb on + strand, within ybhR at 824.621 kb on - strand, within ybhR at 824.689 kb on - strand, within ybhR at 824.788 kb on - strand, within ybhR at 825.226 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction limonene 5 vol% remove 822,891 - +1.0 823,224 + ybhP b0790 0.35 +0.7 823,224 + ybhP b0790 0.35 -0.0 823,296 - ybhP b0790 0.44 +0.1 823,296 - ybhP b0790 0.44 +1.0 823,302 - ybhP b0790 0.45 -1.2 823,331 + ybhP b0790 0.49 -0.9 823,346 + ybhP b0790 0.51 +0.4 823,405 + ybhP b0790 0.59 -0.4 823,434 - ybhP b0790 0.62 +0.8 823,454 - ybhP b0790 0.65 +0.3 823,604 - ybhP b0790 0.85 -0.5 823,653 - +0.2 823,850 + +0.9 823,893 - +0.6 823,947 + ybhQ b0791 0.23 +0.9 823,961 - ybhQ b0791 0.26 +1.6 823,993 + ybhQ b0791 0.34 +1.1 824,064 - ybhQ b0791 0.51 +1.7 824,068 + ybhQ b0791 0.52 +0.5 824,288 - +0.4 824,354 + ybhR b0792 0.12 +0.5 824,354 + ybhR b0792 0.12 +1.5 824,371 - ybhR b0792 0.13 +1.1 824,371 - ybhR b0792 0.13 -0.0 824,501 + ybhR b0792 0.25 -1.2 824,559 + ybhR b0792 0.30 +0.6 824,621 - ybhR b0792 0.36 -0.1 824,689 - ybhR b0792 0.42 +0.1 824,788 - ybhR b0792 0.51 +0.2 825,226 + -0.2
Or see this region's nucleotide sequence