Experiment: limonene 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rihA and gltL are separated by 117 nucleotides gltL and gltK overlap by 1 nucleotides gltK and gltJ overlap by 1 nucleotides gltJ and gltI are separated by 169 nucleotides
b0651: rihA - ribonucleoside hydrolase 1 (NCBI), at 682,700 to 683,635
rihA
b0652: gltL - glutamate and aspartate transporter subunit (NCBI), at 683,753 to 684,478
gltL
b0653: gltK - glutamate and aspartate transporter subunit (NCBI), at 684,478 to 685,152
gltK
b0654: gltJ - glutamate and aspartate transporter subunit (NCBI), at 685,152 to 685,892
gltJ
b0655: gltI - glutamate and aspartate transporter subunit (NCBI), at 686,062 to 686,970
gltI
Position (kb) 684
685
686 Strain fitness (log2 ratio) -1
0
1 at 683.570 kb on + strand at 683.575 kb on + strand at 683.595 kb on + strand at 683.629 kb on + strand at 683.741 kb on - strand at 683.759 kb on - strand at 683.810 kb on - strand at 684.018 kb on + strand, within gltL at 684.018 kb on + strand, within gltL at 684.026 kb on - strand, within gltL at 684.026 kb on - strand, within gltL at 684.222 kb on + strand, within gltL at 684.225 kb on - strand, within gltL at 684.225 kb on - strand, within gltL at 684.414 kb on + strand at 684.414 kb on + strand at 684.519 kb on + strand at 684.571 kb on - strand, within gltK at 684.631 kb on + strand, within gltK at 684.633 kb on - strand, within gltK at 684.650 kb on + strand, within gltK at 684.650 kb on + strand, within gltK at 684.658 kb on - strand, within gltK at 684.658 kb on - strand, within gltK at 684.660 kb on + strand, within gltK at 684.679 kb on - strand, within gltK at 684.679 kb on - strand, within gltK at 684.731 kb on - strand, within gltK at 684.818 kb on - strand, within gltK at 685.049 kb on + strand, within gltK at 685.049 kb on + strand, within gltK at 685.128 kb on - strand at 685.273 kb on - strand, within gltJ at 685.314 kb on + strand, within gltJ at 685.314 kb on + strand, within gltJ at 685.367 kb on + strand, within gltJ at 685.421 kb on + strand, within gltJ at 685.567 kb on + strand, within gltJ at 685.567 kb on + strand, within gltJ at 685.588 kb on + strand, within gltJ at 685.603 kb on + strand, within gltJ at 685.603 kb on + strand, within gltJ at 685.687 kb on + strand, within gltJ at 685.687 kb on + strand, within gltJ at 685.695 kb on - strand, within gltJ at 685.695 kb on - strand, within gltJ at 685.701 kb on - strand, within gltJ at 685.737 kb on - strand, within gltJ at 685.737 kb on - strand, within gltJ at 685.741 kb on - strand, within gltJ at 685.831 kb on + strand at 685.831 kb on - strand at 685.831 kb on - strand at 685.883 kb on - strand at 685.945 kb on + strand at 685.958 kb on - strand at 685.965 kb on - strand at 685.965 kb on - strand at 685.995 kb on + strand at 685.995 kb on + strand at 686.001 kb on + strand at 686.001 kb on + strand at 686.022 kb on - strand at 686.029 kb on - strand at 686.029 kb on - strand at 686.060 kb on + strand at 686.060 kb on + strand at 686.089 kb on + strand at 686.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction limonene 5 vol% remove 683,570 + -0.2 683,575 + +0.3 683,595 + -0.8 683,629 + +0.1 683,741 - +0.3 683,759 - -0.4 683,810 - -0.4 684,018 + gltL b0652 0.37 -0.5 684,018 + gltL b0652 0.37 +0.3 684,026 - gltL b0652 0.38 +0.4 684,026 - gltL b0652 0.38 +1.0 684,222 + gltL b0652 0.65 +0.3 684,225 - gltL b0652 0.65 +0.6 684,225 - gltL b0652 0.65 +1.0 684,414 + +0.7 684,414 + +0.9 684,519 + +0.6 684,571 - gltK b0653 0.14 -0.5 684,631 + gltK b0653 0.23 +0.2 684,633 - gltK b0653 0.23 -1.1 684,650 + gltK b0653 0.25 +0.3 684,650 + gltK b0653 0.25 -0.8 684,658 - gltK b0653 0.27 -0.4 684,658 - gltK b0653 0.27 -0.7 684,660 + gltK b0653 0.27 -0.1 684,679 - gltK b0653 0.30 -0.7 684,679 - gltK b0653 0.30 +0.1 684,731 - gltK b0653 0.37 -0.5 684,818 - gltK b0653 0.50 -0.7 685,049 + gltK b0653 0.85 -0.1 685,049 + gltK b0653 0.85 -0.9 685,128 - +0.2 685,273 - gltJ b0654 0.16 -0.7 685,314 + gltJ b0654 0.22 -0.9 685,314 + gltJ b0654 0.22 +0.1 685,367 + gltJ b0654 0.29 -0.6 685,421 + gltJ b0654 0.36 +0.4 685,567 + gltJ b0654 0.56 +0.3 685,567 + gltJ b0654 0.56 +0.5 685,588 + gltJ b0654 0.59 +0.4 685,603 + gltJ b0654 0.61 +0.5 685,603 + gltJ b0654 0.61 -0.3 685,687 + gltJ b0654 0.72 +0.9 685,687 + gltJ b0654 0.72 +1.2 685,695 - gltJ b0654 0.73 +0.2 685,695 - gltJ b0654 0.73 +0.1 685,701 - gltJ b0654 0.74 -1.1 685,737 - gltJ b0654 0.79 +0.2 685,737 - gltJ b0654 0.79 -1.1 685,741 - gltJ b0654 0.79 +0.2 685,831 + -0.5 685,831 - -0.5 685,831 - -0.3 685,883 - -0.8 685,945 + -0.3 685,958 - +0.4 685,965 - -0.1 685,965 - +0.1 685,995 + -1.4 685,995 + +0.9 686,001 + +0.8 686,001 + +0.6 686,022 - -1.1 686,029 - +1.0 686,029 - +0.8 686,060 + -1.7 686,060 + +1.1 686,089 + +0.5 686,105 - -0.3
Or see this region's nucleotide sequence