Strain Fitness in Escherichia coli BL21 around ECD_04180

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04180 and ECD_04181 overlap by 82 nucleotidesECD_04181 and ECD_04182 are separated by 667 nucleotides ECD_04180: ECD_04180 - IS1 protein InsB, at 4,449,951 to 4,450,454 _04180 ECD_04181: ECD_04181 - IS1 protein InsA, at 4,450,373 to 4,450,648 _04181 ECD_04182: ECD_04182 - tyrosine recombinase/inversion of on/off regulator of fimA, at 4,451,316 to 4,451,912 _04182 Position (kb) 4449 4450 4451Strain fitness (log2 ratio) -2 -1 0 1at 4449.005 kb on - strandat 4449.408 kb on + strandat 4449.747 kb on + strandat 4449.823 kb on + strandat 4449.828 kb on + strandat 4449.829 kb on - strandat 4449.831 kb on + strandat 4449.831 kb on + strandat 4449.832 kb on - strandat 4449.832 kb on - strandat 4449.887 kb on + strandat 4449.926 kb on + strandat 4449.926 kb on + strandat 4449.926 kb on + strandat 4450.726 kb on - strandat 4450.752 kb on - strandat 4450.752 kb on - strandat 4450.761 kb on + strandat 4450.761 kb on + strandat 4450.762 kb on - strandat 4450.842 kb on + strandat 4450.842 kb on + strandat 4450.843 kb on - strandat 4451.114 kb on + strandat 4451.187 kb on + strandat 4451.278 kb on - strandat 4451.408 kb on + strand, within ECD_04182at 4451.441 kb on + strand, within ECD_04182

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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4,449,005 - +0.8
4,449,408 + +0.5
4,449,747 + +0.1
4,449,823 + -0.2
4,449,828 + -0.5
4,449,829 - -0.6
4,449,831 + -0.9
4,449,831 + -0.2
4,449,832 - +0.2
4,449,832 - -1.5
4,449,887 + -1.9
4,449,926 + -2.3
4,449,926 + +0.4
4,449,926 + +1.2
4,450,726 - -0.8
4,450,752 - -0.1
4,450,752 - -0.7
4,450,761 + +0.4
4,450,761 + -0.5
4,450,762 - -0.2
4,450,842 + -0.9
4,450,842 + -0.9
4,450,843 - -0.5
4,451,114 + -0.3
4,451,187 + +0.6
4,451,278 - -1.2
4,451,408 + ECD_04182 0.15 -0.5
4,451,441 + ECD_04182 0.21 -0.1

Or see this region's nucleotide sequence