Strain Fitness in Escherichia coli BL21 around ECD_04066

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04064 and ECD_04065 overlap by 1 nucleotidesECD_04065 and ECD_04066 are separated by 128 nucleotidesECD_04066 and ECD_04067 are separated by 327 nucleotidesECD_04067 and ECD_04068 are separated by 6 nucleotides ECD_04064: ECD_04064 - L-xylulose 5-phosphate 3-epimerase, at 4,329,366 to 4,330,220 _04064 ECD_04065: ECD_04065 - L-ribulose 5-phosphate 4-epimerase, at 4,330,220 to 4,330,906 _04065 ECD_04066: ECD_04066 - YhcN family protein, periplasmic, at 4,331,035 to 4,331,310 _04066 ECD_04067: ECD_04067 - 30S ribosomal subunit protein S6, at 4,331,638 to 4,332,033 _04067 ECD_04068: ECD_04068 - primosomal protein N, at 4,332,040 to 4,332,354 _04068 Position (kb) 4331 4332Strain fitness (log2 ratio) -1 0 1at 4330.095 kb on + strand, within ECD_04064at 4330.242 kb on + strandat 4330.242 kb on + strandat 4330.243 kb on - strandat 4330.288 kb on + strandat 4330.397 kb on - strand, within ECD_04065at 4330.397 kb on - strand, within ECD_04065at 4330.575 kb on - strand, within ECD_04065at 4330.694 kb on - strand, within ECD_04065at 4330.694 kb on - strand, within ECD_04065at 4330.694 kb on - strand, within ECD_04065at 4330.712 kb on + strand, within ECD_04065at 4330.813 kb on + strand, within ECD_04065at 4330.813 kb on + strand, within ECD_04065at 4330.814 kb on - strand, within ECD_04065at 4330.816 kb on + strand, within ECD_04065at 4330.817 kb on - strand, within ECD_04065at 4330.889 kb on + strandat 4330.893 kb on - strandat 4330.905 kb on - strandat 4330.905 kb on - strandat 4330.942 kb on - strandat 4330.942 kb on - strandat 4331.004 kb on + strandat 4331.005 kb on - strandat 4331.026 kb on + strandat 4331.026 kb on + strandat 4331.027 kb on - strandat 4331.064 kb on + strand, within ECD_04066at 4331.073 kb on + strand, within ECD_04066at 4331.106 kb on - strand, within ECD_04066at 4331.106 kb on - strand, within ECD_04066at 4331.109 kb on - strand, within ECD_04066at 4331.109 kb on - strand, within ECD_04066at 4331.109 kb on - strand, within ECD_04066at 4331.140 kb on + strand, within ECD_04066at 4331.140 kb on + strand, within ECD_04066at 4331.141 kb on - strand, within ECD_04066at 4331.176 kb on - strand, within ECD_04066at 4331.176 kb on - strand, within ECD_04066at 4331.176 kb on - strand, within ECD_04066at 4331.186 kb on + strand, within ECD_04066at 4331.198 kb on - strand, within ECD_04066at 4331.198 kb on - strand, within ECD_04066at 4331.217 kb on + strand, within ECD_04066at 4331.239 kb on - strand, within ECD_04066at 4331.259 kb on + strand, within ECD_04066at 4331.259 kb on + strand, within ECD_04066at 4331.293 kb on + strandat 4331.310 kb on + strandat 4331.310 kb on + strandat 4331.310 kb on + strandat 4331.310 kb on + strandat 4331.310 kb on + strandat 4331.310 kb on + strandat 4331.310 kb on + strandat 4331.310 kb on + strandat 4331.311 kb on - strandat 4331.311 kb on - strandat 4331.311 kb on - strandat 4331.314 kb on + strandat 4331.315 kb on - strandat 4331.315 kb on - strandat 4331.315 kb on - strandat 4331.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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4,330,095 + ECD_04064 0.85 +0.3
4,330,242 + -0.4
4,330,242 + +0.4
4,330,243 - -0.1
4,330,288 + -1.2
4,330,397 - ECD_04065 0.26 -0.3
4,330,397 - ECD_04065 0.26 +0.4
4,330,575 - ECD_04065 0.52 +0.5
4,330,694 - ECD_04065 0.69 +0.0
4,330,694 - ECD_04065 0.69 -0.3
4,330,694 - ECD_04065 0.69 -1.2
4,330,712 + ECD_04065 0.72 +0.1
4,330,813 + ECD_04065 0.86 -1.0
4,330,813 + ECD_04065 0.86 -0.4
4,330,814 - ECD_04065 0.86 -0.1
4,330,816 + ECD_04065 0.87 +1.0
4,330,817 - ECD_04065 0.87 -0.1
4,330,889 + +0.5
4,330,893 - +0.4
4,330,905 - +0.2
4,330,905 - -0.1
4,330,942 - -0.6
4,330,942 - -0.1
4,331,004 + -0.1
4,331,005 - -0.4
4,331,026 + +0.1
4,331,026 + -0.6
4,331,027 - -0.0
4,331,064 + ECD_04066 0.11 -1.0
4,331,073 + ECD_04066 0.14 -1.1
4,331,106 - ECD_04066 0.26 -0.1
4,331,106 - ECD_04066 0.26 +0.5
4,331,109 - ECD_04066 0.27 -0.8
4,331,109 - ECD_04066 0.27 -0.1
4,331,109 - ECD_04066 0.27 +0.3
4,331,140 + ECD_04066 0.38 -0.4
4,331,140 + ECD_04066 0.38 -0.6
4,331,141 - ECD_04066 0.38 +0.6
4,331,176 - ECD_04066 0.51 +0.2
4,331,176 - ECD_04066 0.51 -0.4
4,331,176 - ECD_04066 0.51 +0.2
4,331,186 + ECD_04066 0.55 -0.5
4,331,198 - ECD_04066 0.59 +0.4
4,331,198 - ECD_04066 0.59 -0.7
4,331,217 + ECD_04066 0.66 -0.4
4,331,239 - ECD_04066 0.74 +0.2
4,331,259 + ECD_04066 0.81 -0.2
4,331,259 + ECD_04066 0.81 -0.3
4,331,293 + +0.2
4,331,310 + +0.6
4,331,310 + +0.1
4,331,310 + -0.1
4,331,310 + +0.5
4,331,310 + +0.8
4,331,310 + +1.0
4,331,310 + -0.1
4,331,310 + +0.3
4,331,311 - +0.0
4,331,311 - -0.6
4,331,311 - -0.5
4,331,314 + -1.3
4,331,315 - +0.5
4,331,315 - +0.1
4,331,315 - -0.8
4,331,315 - -0.5

Or see this region's nucleotide sequence