Strain Fitness in Escherichia coli BL21 around ECD_03791

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03790 and ECD_03791 are separated by 287 nucleotidesECD_03791 and ECD_03792 overlap by 17 nucleotidesECD_03792 and ECD_03793 overlap by 4 nucleotides ECD_03790: ECD_03790 - rhamnulokinase, at 4,003,901 to 4,005,370 _03790 ECD_03791: ECD_03791 - transcriptional activator of rhaBAD and rhaT, at 4,005,658 to 4,006,494 _03791 ECD_03792: ECD_03792 - transcriptional activator of rhaSR, at 4,006,478 to 4,007,416 _03792 ECD_03793: ECD_03793 - L-rhamnose:proton symporter, at 4,007,413 to 4,008,447 _03793 Position (kb) 4005 4006 4007Strain fitness (log2 ratio) -2 -1 0 1at 4004.696 kb on - strand, within ECD_03790at 4004.720 kb on + strand, within ECD_03790at 4004.720 kb on + strand, within ECD_03790at 4004.721 kb on - strand, within ECD_03790at 4004.721 kb on - strand, within ECD_03790at 4004.842 kb on + strand, within ECD_03790at 4004.842 kb on + strand, within ECD_03790at 4004.842 kb on + strand, within ECD_03790at 4004.842 kb on + strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.843 kb on - strand, within ECD_03790at 4004.845 kb on - strand, within ECD_03790at 4004.883 kb on + strand, within ECD_03790at 4004.883 kb on + strand, within ECD_03790at 4004.920 kb on + strand, within ECD_03790at 4004.920 kb on + strand, within ECD_03790at 4004.921 kb on - strand, within ECD_03790at 4004.959 kb on - strand, within ECD_03790at 4004.966 kb on - strand, within ECD_03790at 4004.992 kb on + strand, within ECD_03790at 4004.992 kb on + strand, within ECD_03790at 4004.993 kb on - strand, within ECD_03790at 4005.001 kb on - strand, within ECD_03790at 4005.001 kb on - strand, within ECD_03790at 4005.001 kb on - strand, within ECD_03790at 4005.042 kb on - strand, within ECD_03790at 4005.145 kb on + strand, within ECD_03790at 4005.180 kb on - strand, within ECD_03790at 4005.370 kb on + strandat 4005.371 kb on - strandat 4005.551 kb on - strandat 4005.601 kb on + strandat 4005.601 kb on + strandat 4005.601 kb on + strandat 4005.601 kb on + strandat 4005.622 kb on - strandat 4005.665 kb on + strandat 4005.668 kb on + strandat 4005.668 kb on + strandat 4005.668 kb on + strandat 4005.668 kb on + strandat 4005.669 kb on - strandat 4005.669 kb on - strandat 4005.672 kb on + strandat 4005.672 kb on + strandat 4005.713 kb on + strandat 4005.820 kb on + strand, within ECD_03791at 4005.822 kb on + strand, within ECD_03791at 4005.874 kb on + strand, within ECD_03791at 4005.883 kb on - strand, within ECD_03791at 4006.016 kb on + strand, within ECD_03791at 4006.017 kb on - strand, within ECD_03791at 4006.076 kb on + strand, within ECD_03791at 4006.107 kb on + strand, within ECD_03791at 4006.107 kb on + strand, within ECD_03791at 4006.108 kb on - strand, within ECD_03791at 4006.116 kb on - strand, within ECD_03791at 4006.132 kb on - strand, within ECD_03791at 4006.268 kb on + strand, within ECD_03791at 4006.269 kb on - strand, within ECD_03791at 4006.269 kb on - strand, within ECD_03791at 4006.282 kb on - strand, within ECD_03791at 4006.352 kb on + strand, within ECD_03791at 4006.352 kb on + strand, within ECD_03791at 4006.352 kb on + strand, within ECD_03791at 4006.444 kb on - strandat 4006.461 kb on + strandat 4006.462 kb on - strandat 4006.513 kb on - strandat 4006.534 kb on + strandat 4006.581 kb on + strand, within ECD_03792at 4006.669 kb on + strand, within ECD_03792at 4006.669 kb on + strand, within ECD_03792at 4006.669 kb on + strand, within ECD_03792at 4006.669 kb on + strand, within ECD_03792at 4006.669 kb on + strand, within ECD_03792at 4006.669 kb on + strand, within ECD_03792at 4006.669 kb on + strand, within ECD_03792at 4006.669 kb on + strand, within ECD_03792at 4006.670 kb on - strand, within ECD_03792at 4006.670 kb on - strand, within ECD_03792at 4006.670 kb on - strand, within ECD_03792at 4006.670 kb on - strand, within ECD_03792at 4006.670 kb on - strand, within ECD_03792at 4006.670 kb on - strand, within ECD_03792at 4006.670 kb on - strand, within ECD_03792at 4006.670 kb on - strand, within ECD_03792at 4006.722 kb on + strand, within ECD_03792at 4006.722 kb on + strand, within ECD_03792at 4006.722 kb on + strand, within ECD_03792at 4006.723 kb on - strand, within ECD_03792at 4006.723 kb on - strand, within ECD_03792at 4006.767 kb on - strand, within ECD_03792at 4006.794 kb on - strand, within ECD_03792at 4006.828 kb on + strand, within ECD_03792at 4006.828 kb on + strand, within ECD_03792at 4006.828 kb on + strand, within ECD_03792at 4006.832 kb on + strand, within ECD_03792at 4006.833 kb on - strand, within ECD_03792at 4006.889 kb on - strand, within ECD_03792at 4006.920 kb on + strand, within ECD_03792at 4006.925 kb on - strand, within ECD_03792at 4006.955 kb on - strand, within ECD_03792at 4006.979 kb on - strand, within ECD_03792at 4007.058 kb on - strand, within ECD_03792at 4007.237 kb on + strand, within ECD_03792at 4007.270 kb on + strand, within ECD_03792at 4007.333 kb on - strandat 4007.333 kb on - strandat 4007.335 kb on + strandat 4007.335 kb on + strandat 4007.336 kb on - strandat 4007.339 kb on + strandat 4007.340 kb on - strandat 4007.455 kb on - strandat 4007.455 kb on - strandat 4007.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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4,004,696 - ECD_03790 0.54 -0.4
4,004,720 + ECD_03790 0.56 -0.0
4,004,720 + ECD_03790 0.56 -0.4
4,004,721 - ECD_03790 0.56 -0.3
4,004,721 - ECD_03790 0.56 -0.1
4,004,842 + ECD_03790 0.64 +0.1
4,004,842 + ECD_03790 0.64 -0.8
4,004,842 + ECD_03790 0.64 -0.2
4,004,842 + ECD_03790 0.64 -0.4
4,004,843 - ECD_03790 0.64 -0.6
4,004,843 - ECD_03790 0.64 -0.5
4,004,843 - ECD_03790 0.64 -0.9
4,004,843 - ECD_03790 0.64 +0.3
4,004,843 - ECD_03790 0.64 +0.2
4,004,845 - ECD_03790 0.64 +0.0
4,004,883 + ECD_03790 0.67 -0.3
4,004,883 + ECD_03790 0.67 +0.0
4,004,920 + ECD_03790 0.69 -2.4
4,004,920 + ECD_03790 0.69 -0.3
4,004,921 - ECD_03790 0.69 -0.4
4,004,959 - ECD_03790 0.72 -0.4
4,004,966 - ECD_03790 0.72 -1.6
4,004,992 + ECD_03790 0.74 +0.6
4,004,992 + ECD_03790 0.74 +0.2
4,004,993 - ECD_03790 0.74 -0.2
4,005,001 - ECD_03790 0.75 +0.7
4,005,001 - ECD_03790 0.75 -0.5
4,005,001 - ECD_03790 0.75 -0.9
4,005,042 - ECD_03790 0.78 -1.7
4,005,145 + ECD_03790 0.85 -0.4
4,005,180 - ECD_03790 0.87 -0.7
4,005,370 + -0.9
4,005,371 - -0.5
4,005,551 - -0.9
4,005,601 + -0.1
4,005,601 + +0.4
4,005,601 + -0.1
4,005,601 + -0.0
4,005,622 - -0.5
4,005,665 + -0.1
4,005,668 + -0.2
4,005,668 + -0.4
4,005,668 + -0.3
4,005,668 + +0.3
4,005,669 - -0.1
4,005,669 - -0.4
4,005,672 + +0.5
4,005,672 + -0.2
4,005,713 + +0.5
4,005,820 + ECD_03791 0.19 -1.2
4,005,822 + ECD_03791 0.20 -0.0
4,005,874 + ECD_03791 0.26 -0.3
4,005,883 - ECD_03791 0.27 -0.1
4,006,016 + ECD_03791 0.43 +0.1
4,006,017 - ECD_03791 0.43 +0.6
4,006,076 + ECD_03791 0.50 -0.2
4,006,107 + ECD_03791 0.54 -0.1
4,006,107 + ECD_03791 0.54 -0.5
4,006,108 - ECD_03791 0.54 -0.4
4,006,116 - ECD_03791 0.55 +0.4
4,006,132 - ECD_03791 0.57 -0.6
4,006,268 + ECD_03791 0.73 -0.4
4,006,269 - ECD_03791 0.73 -0.4
4,006,269 - ECD_03791 0.73 -0.2
4,006,282 - ECD_03791 0.75 -0.9
4,006,352 + ECD_03791 0.83 +0.0
4,006,352 + ECD_03791 0.83 -0.6
4,006,352 + ECD_03791 0.83 +0.2
4,006,444 - -0.3
4,006,461 + +0.0
4,006,462 - -0.9
4,006,513 - -0.4
4,006,534 + -0.7
4,006,581 + ECD_03792 0.11 -0.2
4,006,669 + ECD_03792 0.20 -0.2
4,006,669 + ECD_03792 0.20 +0.0
4,006,669 + ECD_03792 0.20 -0.2
4,006,669 + ECD_03792 0.20 -0.0
4,006,669 + ECD_03792 0.20 -0.5
4,006,669 + ECD_03792 0.20 +0.0
4,006,669 + ECD_03792 0.20 -0.0
4,006,669 + ECD_03792 0.20 -0.7
4,006,670 - ECD_03792 0.20 +0.2
4,006,670 - ECD_03792 0.20 +0.6
4,006,670 - ECD_03792 0.20 +0.3
4,006,670 - ECD_03792 0.20 -0.2
4,006,670 - ECD_03792 0.20 +0.1
4,006,670 - ECD_03792 0.20 -0.2
4,006,670 - ECD_03792 0.20 +0.8
4,006,670 - ECD_03792 0.20 -1.4
4,006,722 + ECD_03792 0.26 +0.6
4,006,722 + ECD_03792 0.26 -0.4
4,006,722 + ECD_03792 0.26 -1.0
4,006,723 - ECD_03792 0.26 -0.7
4,006,723 - ECD_03792 0.26 +1.3
4,006,767 - ECD_03792 0.31 +0.1
4,006,794 - ECD_03792 0.34 -1.0
4,006,828 + ECD_03792 0.37 -0.3
4,006,828 + ECD_03792 0.37 -0.2
4,006,828 + ECD_03792 0.37 +0.0
4,006,832 + ECD_03792 0.38 +0.2
4,006,833 - ECD_03792 0.38 +0.4
4,006,889 - ECD_03792 0.44 -0.6
4,006,920 + ECD_03792 0.47 -0.9
4,006,925 - ECD_03792 0.48 +0.4
4,006,955 - ECD_03792 0.51 +0.1
4,006,979 - ECD_03792 0.53 -0.4
4,007,058 - ECD_03792 0.62 -1.5
4,007,237 + ECD_03792 0.81 -0.2
4,007,270 + ECD_03792 0.84 -0.3
4,007,333 - -0.9
4,007,333 - -0.3
4,007,335 + +1.2
4,007,335 + -1.2
4,007,336 - -0.9
4,007,339 + -0.3
4,007,340 - +0.2
4,007,455 - -0.2
4,007,455 - -0.1
4,007,455 - -0.5

Or see this region's nucleotide sequence