Strain Fitness in Escherichia coli BL21 around ECD_03610

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03608 and ECD_03609 are separated by 14 nucleotidesECD_03609 and ECD_03610 are separated by 182 nucleotidesECD_03610 and ECD_03611 overlap by 1 nucleotides ECD_03608: ECD_03608 - negative regulator of PhoR/PhoB two-component regulator, at 3,795,655 to 3,796,380 _03608 ECD_03609: ECD_03609 - phosphate ABC transporter ATPase, at 3,796,395 to 3,797,168 _03609 ECD_03610: ECD_03610 - phosphate ABC transporter permease, at 3,797,351 to 3,798,241 _03610 ECD_03611: ECD_03611 - phosphate ABC transporter permease, at 3,798,241 to 3,799,200 _03611 Position (kb) 3797 3798 3799Strain fitness (log2 ratio) -1 0 1at 3796.418 kb on - strandat 3797.216 kb on - strandat 3797.417 kb on - strandat 3797.427 kb on - strandat 3797.480 kb on - strand, within ECD_03610at 3797.680 kb on - strand, within ECD_03610at 3797.923 kb on - strand, within ECD_03610at 3798.065 kb on - strand, within ECD_03610at 3798.065 kb on - strand, within ECD_03610at 3798.310 kb on - strandat 3798.403 kb on - strand, within ECD_03611at 3798.403 kb on - strand, within ECD_03611at 3798.420 kb on - strand, within ECD_03611at 3798.420 kb on - strand, within ECD_03611at 3798.420 kb on - strand, within ECD_03611at 3798.420 kb on - strand, within ECD_03611at 3798.444 kb on - strand, within ECD_03611at 3798.444 kb on - strand, within ECD_03611at 3798.444 kb on - strand, within ECD_03611at 3798.559 kb on - strand, within ECD_03611at 3798.754 kb on - strand, within ECD_03611at 3799.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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3,796,418 - -0.8
3,797,216 - +0.1
3,797,417 - -0.8
3,797,427 - -0.0
3,797,480 - ECD_03610 0.14 -1.0
3,797,680 - ECD_03610 0.37 -0.1
3,797,923 - ECD_03610 0.64 -0.7
3,798,065 - ECD_03610 0.80 -1.1
3,798,065 - ECD_03610 0.80 -1.2
3,798,310 - -0.4
3,798,403 - ECD_03611 0.17 -0.9
3,798,403 - ECD_03611 0.17 -1.0
3,798,420 - ECD_03611 0.19 +0.3
3,798,420 - ECD_03611 0.19 +0.4
3,798,420 - ECD_03611 0.19 -0.9
3,798,420 - ECD_03611 0.19 -0.2
3,798,444 - ECD_03611 0.21 -0.2
3,798,444 - ECD_03611 0.21 -0.3
3,798,444 - ECD_03611 0.21 -0.1
3,798,559 - ECD_03611 0.33 -0.8
3,798,754 - ECD_03611 0.53 -0.8
3,799,227 - -0.7

Or see this region's nucleotide sequence