Strain Fitness in Escherichia coli BL21 around ECD_03492

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03490 and ECD_03491 are separated by 7 nucleotidesECD_03491 and ECD_03492 are separated by 38 nucleotidesECD_03492 and ECD_03493 are separated by 97 nucleotidesECD_03493 and ECD_03494 are separated by 20 nucleotidesECD_03494 and ECD_03495 are separated by 216 nucleotides ECD_03490: ECD_03490 - 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase), at 3,675,330 to 3,676,607 _03490 ECD_03491: ECD_03491 - pantetheine-phosphate adenylyltransferase, at 3,676,615 to 3,677,094 _03491 ECD_03492: ECD_03492 - formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase, at 3,677,133 to 3,677,942 _03492 ECD_03493: ECD_03493 - 50S ribosomal subunit protein L33, at 3,678,040 to 3,678,207 _03493 ECD_03494: ECD_03494 - 50S ribosomal subunit protein L28, at 3,678,228 to 3,678,464 _03494 ECD_03495: ECD_03495 - UPF0758 family protein, at 3,678,681 to 3,679,349 _03495 Position (kb) 3677 3678Strain fitness (log2 ratio) -2 -1 0 1at 3676.614 kb on + strandat 3677.111 kb on + strandat 3677.111 kb on + strandat 3677.112 kb on - strandat 3677.134 kb on + strandat 3677.267 kb on + strand, within ECD_03492at 3677.300 kb on + strand, within ECD_03492at 3677.431 kb on + strand, within ECD_03492at 3677.432 kb on - strand, within ECD_03492at 3677.432 kb on - strand, within ECD_03492at 3677.435 kb on + strand, within ECD_03492at 3677.435 kb on + strand, within ECD_03492at 3677.436 kb on - strand, within ECD_03492at 3677.518 kb on + strand, within ECD_03492at 3677.572 kb on + strand, within ECD_03492at 3677.573 kb on + strand, within ECD_03492at 3677.574 kb on - strand, within ECD_03492at 3677.574 kb on - strand, within ECD_03492at 3677.727 kb on + strand, within ECD_03492at 3677.728 kb on - strand, within ECD_03492at 3677.738 kb on + strand, within ECD_03492at 3677.738 kb on + strand, within ECD_03492at 3677.770 kb on + strand, within ECD_03492at 3677.770 kb on + strand, within ECD_03492at 3677.792 kb on + strand, within ECD_03492at 3677.792 kb on + strand, within ECD_03492at 3677.942 kb on + strandat 3677.942 kb on + strandat 3677.943 kb on - strandat 3677.943 kb on - strandat 3678.713 kb on - strandat 3678.774 kb on + strand, within ECD_03495at 3678.775 kb on - strand, within ECD_03495at 3678.836 kb on + strand, within ECD_03495at 3678.836 kb on + strand, within ECD_03495at 3678.837 kb on - strand, within ECD_03495at 3678.837 kb on - strand, within ECD_03495

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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3,676,614 + +0.8
3,677,111 + -0.1
3,677,111 + -0.7
3,677,112 - -1.2
3,677,134 + -0.6
3,677,267 + ECD_03492 0.17 -1.8
3,677,300 + ECD_03492 0.21 -0.7
3,677,431 + ECD_03492 0.37 -2.2
3,677,432 - ECD_03492 0.37 -0.8
3,677,432 - ECD_03492 0.37 -0.7
3,677,435 + ECD_03492 0.37 -0.2
3,677,435 + ECD_03492 0.37 -2.5
3,677,436 - ECD_03492 0.37 -0.5
3,677,518 + ECD_03492 0.48 -0.7
3,677,572 + ECD_03492 0.54 -0.9
3,677,573 + ECD_03492 0.54 -0.7
3,677,574 - ECD_03492 0.54 -0.5
3,677,574 - ECD_03492 0.54 -0.7
3,677,727 + ECD_03492 0.73 -0.2
3,677,728 - ECD_03492 0.73 -1.1
3,677,738 + ECD_03492 0.75 -0.4
3,677,738 + ECD_03492 0.75 -0.3
3,677,770 + ECD_03492 0.79 -0.8
3,677,770 + ECD_03492 0.79 -0.1
3,677,792 + ECD_03492 0.81 +0.8
3,677,792 + ECD_03492 0.81 +0.1
3,677,942 + -1.1
3,677,942 + +1.1
3,677,943 - -0.6
3,677,943 - -0.4
3,678,713 - +1.1
3,678,774 + ECD_03495 0.14 +0.3
3,678,775 - ECD_03495 0.14 +0.6
3,678,836 + ECD_03495 0.23 -0.4
3,678,836 + ECD_03495 0.23 +0.4
3,678,837 - ECD_03495 0.23 +0.1
3,678,837 - ECD_03495 0.23 +0.2

Or see this region's nucleotide sequence