Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03490 and ECD_03491 are separated by 7 nucleotides ECD_03491 and ECD_03492 are separated by 38 nucleotides ECD_03492 and ECD_03493 are separated by 97 nucleotides ECD_03493 and ECD_03494 are separated by 20 nucleotides ECD_03494 and ECD_03495 are separated by 216 nucleotides
ECD_03490: ECD_03490 - 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase), at 3,675,330 to 3,676,607
_03490
ECD_03491: ECD_03491 - pantetheine-phosphate adenylyltransferase, at 3,676,615 to 3,677,094
_03491
ECD_03492: ECD_03492 - formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase, at 3,677,133 to 3,677,942
_03492
ECD_03493: ECD_03493 - 50S ribosomal subunit protein L33, at 3,678,040 to 3,678,207
_03493
ECD_03494: ECD_03494 - 50S ribosomal subunit protein L28, at 3,678,228 to 3,678,464
_03494
ECD_03495: ECD_03495 - UPF0758 family protein, at 3,678,681 to 3,679,349
_03495
Position (kb)
3677
3678 Strain fitness (log2 ratio)
-2
-1
0
1 at 3676.614 kb on + strand at 3677.111 kb on + strand at 3677.111 kb on + strand at 3677.112 kb on - strand at 3677.134 kb on + strand at 3677.267 kb on + strand, within ECD_03492 at 3677.300 kb on + strand, within ECD_03492 at 3677.431 kb on + strand, within ECD_03492 at 3677.432 kb on - strand, within ECD_03492 at 3677.432 kb on - strand, within ECD_03492 at 3677.435 kb on + strand, within ECD_03492 at 3677.435 kb on + strand, within ECD_03492 at 3677.436 kb on - strand, within ECD_03492 at 3677.518 kb on + strand, within ECD_03492 at 3677.572 kb on + strand, within ECD_03492 at 3677.573 kb on + strand, within ECD_03492 at 3677.574 kb on - strand, within ECD_03492 at 3677.574 kb on - strand, within ECD_03492 at 3677.727 kb on + strand, within ECD_03492 at 3677.728 kb on - strand, within ECD_03492 at 3677.738 kb on + strand, within ECD_03492 at 3677.738 kb on + strand, within ECD_03492 at 3677.770 kb on + strand, within ECD_03492 at 3677.770 kb on + strand, within ECD_03492 at 3677.792 kb on + strand, within ECD_03492 at 3677.792 kb on + strand, within ECD_03492 at 3677.942 kb on + strand at 3677.942 kb on + strand at 3677.943 kb on - strand at 3677.943 kb on - strand at 3678.713 kb on - strand at 3678.774 kb on + strand, within ECD_03495 at 3678.775 kb on - strand, within ECD_03495 at 3678.836 kb on + strand, within ECD_03495 at 3678.836 kb on + strand, within ECD_03495 at 3678.837 kb on - strand, within ECD_03495 at 3678.837 kb on - strand, within ECD_03495
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 3,676,614 + +0.8 3,677,111 + -0.1 3,677,111 + -0.7 3,677,112 - -1.2 3,677,134 + -0.6 3,677,267 + ECD_03492 0.17 -1.8 3,677,300 + ECD_03492 0.21 -0.7 3,677,431 + ECD_03492 0.37 -2.2 3,677,432 - ECD_03492 0.37 -0.8 3,677,432 - ECD_03492 0.37 -0.7 3,677,435 + ECD_03492 0.37 -0.2 3,677,435 + ECD_03492 0.37 -2.5 3,677,436 - ECD_03492 0.37 -0.5 3,677,518 + ECD_03492 0.48 -0.7 3,677,572 + ECD_03492 0.54 -0.9 3,677,573 + ECD_03492 0.54 -0.7 3,677,574 - ECD_03492 0.54 -0.5 3,677,574 - ECD_03492 0.54 -0.7 3,677,727 + ECD_03492 0.73 -0.2 3,677,728 - ECD_03492 0.73 -1.1 3,677,738 + ECD_03492 0.75 -0.4 3,677,738 + ECD_03492 0.75 -0.3 3,677,770 + ECD_03492 0.79 -0.8 3,677,770 + ECD_03492 0.79 -0.1 3,677,792 + ECD_03492 0.81 +0.8 3,677,792 + ECD_03492 0.81 +0.1 3,677,942 + -1.1 3,677,942 + +1.1 3,677,943 - -0.6 3,677,943 - -0.4 3,678,713 - +1.1 3,678,774 + ECD_03495 0.14 +0.3 3,678,775 - ECD_03495 0.14 +0.6 3,678,836 + ECD_03495 0.23 -0.4 3,678,836 + ECD_03495 0.23 +0.4 3,678,837 - ECD_03495 0.23 +0.1 3,678,837 - ECD_03495 0.23 +0.2
Or see this region's nucleotide sequence