Strain Fitness in Escherichia coli BL21 around ECD_03479

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03478 and ECD_03479 are separated by 69 nucleotidesECD_03479 and ECD_03480 are separated by 45 nucleotides ECD_03478: ECD_03478 - ADP-heptose:LPS heptosyl transferase I, at 3,663,958 to 3,664,938 _03478 ECD_03479: ECD_03479 - Lipid A-core, surface polymer ligase, at 3,665,008 to 3,666,261 _03479 ECD_03480: ECD_03480 - putative beta1,3-glucosyltransferase, at 3,666,307 to 3,667,290 _03480 Position (kb) 3665 3666 3667Strain fitness (log2 ratio) -2 -1 0 1at 3664.348 kb on - strand, within ECD_03478at 3665.119 kb on + strandat 3665.188 kb on + strand, within ECD_03479at 3665.221 kb on + strand, within ECD_03479at 3665.285 kb on - strand, within ECD_03479at 3665.656 kb on + strand, within ECD_03479at 3665.657 kb on - strand, within ECD_03479at 3665.680 kb on - strand, within ECD_03479at 3665.786 kb on - strand, within ECD_03479at 3666.569 kb on - strand, within ECD_03480at 3666.670 kb on - strand, within ECD_03480at 3666.894 kb on - strand, within ECD_03480at 3666.991 kb on - strand, within ECD_03480

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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3,664,348 - ECD_03478 0.40 +0.3
3,665,119 + -1.4
3,665,188 + ECD_03479 0.14 -0.5
3,665,221 + ECD_03479 0.17 -0.8
3,665,285 - ECD_03479 0.22 -1.3
3,665,656 + ECD_03479 0.52 -0.9
3,665,657 - ECD_03479 0.52 -1.1
3,665,680 - ECD_03479 0.54 -1.1
3,665,786 - ECD_03479 0.62 -1.4
3,666,569 - ECD_03480 0.27 -0.9
3,666,670 - ECD_03480 0.37 -0.4
3,666,894 - ECD_03480 0.60 -2.4
3,666,991 - ECD_03480 0.70 -1.3

Or see this region's nucleotide sequence