Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02780 and ECD_02781 are separated by 17 nucleotides ECD_02781 and ECD_02782 are separated by 17 nucleotides ECD_02782 and ECD_02783 overlap by 4 nucleotides ECD_02783 and ECD_02784 are separated by 7 nucleotides
ECD_02780: ECD_02780 - putative PilT family AAA+ ATPase, at 2,924,958 to 2,925,938
_02780
ECD_02781: ECD_02781 - UPF0001 family protein, PLP-binding, at 2,925,956 to 2,926,660
_02781
ECD_02782: ECD_02782 - putative inner membrane protein; compensates for loss in K+ uptake, at 2,926,678 to 2,927,244
_02782
ECD_02783: ECD_02783 - UPF0235 family protein, at 2,927,241 to 2,927,531
_02783
ECD_02784: ECD_02784 - dITP/XTP pyrophosphatase, at 2,927,539 to 2,928,132
_02784
Position (kb)
2925
2926
2927 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2924.990 kb on - strand at 2925.033 kb on - strand at 2925.260 kb on + strand, within ECD_02780 at 2925.261 kb on - strand, within ECD_02780 at 2925.264 kb on + strand, within ECD_02780 at 2925.401 kb on + strand, within ECD_02780 at 2925.402 kb on - strand, within ECD_02780 at 2925.402 kb on - strand, within ECD_02780 at 2925.402 kb on - strand, within ECD_02780 at 2925.451 kb on + strand, within ECD_02780 at 2925.458 kb on - strand, within ECD_02780 at 2925.458 kb on - strand, within ECD_02780 at 2925.511 kb on + strand, within ECD_02780 at 2925.651 kb on + strand, within ECD_02780 at 2925.762 kb on + strand, within ECD_02780 at 2925.798 kb on + strand, within ECD_02780 at 2925.798 kb on + strand, within ECD_02780 at 2925.885 kb on + strand at 2925.886 kb on - strand at 2925.899 kb on + strand at 2925.899 kb on + strand at 2925.900 kb on - strand at 2925.907 kb on - strand at 2925.912 kb on - strand at 2925.933 kb on - strand at 2925.933 kb on - strand at 2925.933 kb on - strand at 2925.938 kb on + strand at 2925.939 kb on - strand at 2925.942 kb on - strand at 2926.148 kb on - strand, within ECD_02781 at 2926.186 kb on - strand, within ECD_02781 at 2926.217 kb on - strand, within ECD_02781 at 2926.219 kb on + strand, within ECD_02781 at 2926.258 kb on + strand, within ECD_02781 at 2926.258 kb on + strand, within ECD_02781 at 2926.363 kb on + strand, within ECD_02781 at 2926.419 kb on + strand, within ECD_02781 at 2926.472 kb on + strand, within ECD_02781 at 2926.472 kb on + strand, within ECD_02781 at 2926.472 kb on + strand, within ECD_02781 at 2926.473 kb on - strand, within ECD_02781 at 2926.473 kb on - strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.476 kb on + strand, within ECD_02781 at 2926.477 kb on - strand, within ECD_02781 at 2926.509 kb on + strand, within ECD_02781 at 2926.600 kb on + strand at 2926.722 kb on + strand at 2926.885 kb on + strand, within ECD_02782 at 2927.286 kb on + strand, within ECD_02783 at 2927.286 kb on + strand, within ECD_02783 at 2927.287 kb on - strand, within ECD_02783 at 2927.288 kb on + strand, within ECD_02783 at 2927.315 kb on + strand, within ECD_02783 at 2927.315 kb on + strand, within ECD_02783 at 2927.316 kb on - strand, within ECD_02783 at 2927.326 kb on + strand, within ECD_02783 at 2927.326 kb on + strand, within ECD_02783 at 2927.525 kb on + strand at 2927.525 kb on + strand at 2927.529 kb on + strand at 2927.529 kb on + strand at 2927.533 kb on + strand at 2927.533 kb on + strand at 2927.538 kb on + strand at 2927.538 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,924,990 - -1.1 2,925,033 - -0.0 2,925,260 + ECD_02780 0.31 -2.9 2,925,261 - ECD_02780 0.31 +0.6 2,925,264 + ECD_02780 0.31 -0.4 2,925,401 + ECD_02780 0.45 +0.5 2,925,402 - ECD_02780 0.45 -0.6 2,925,402 - ECD_02780 0.45 +1.4 2,925,402 - ECD_02780 0.45 -0.8 2,925,451 + ECD_02780 0.50 -2.1 2,925,458 - ECD_02780 0.51 -1.8 2,925,458 - ECD_02780 0.51 +0.2 2,925,511 + ECD_02780 0.56 -0.9 2,925,651 + ECD_02780 0.71 -1.2 2,925,762 + ECD_02780 0.82 -1.6 2,925,798 + ECD_02780 0.86 -0.6 2,925,798 + ECD_02780 0.86 +0.9 2,925,885 + +0.1 2,925,886 - -0.3 2,925,899 + -0.3 2,925,899 + -0.4 2,925,900 - +1.4 2,925,907 - +1.8 2,925,912 - -0.5 2,925,933 - -0.5 2,925,933 - -0.3 2,925,933 - -1.0 2,925,938 + +0.5 2,925,939 - -0.9 2,925,942 - -0.3 2,926,148 - ECD_02781 0.27 -0.2 2,926,186 - ECD_02781 0.33 -1.8 2,926,217 - ECD_02781 0.37 -0.4 2,926,219 + ECD_02781 0.37 -0.3 2,926,258 + ECD_02781 0.43 -0.2 2,926,258 + ECD_02781 0.43 -1.2 2,926,363 + ECD_02781 0.58 +0.6 2,926,419 + ECD_02781 0.66 +0.3 2,926,472 + ECD_02781 0.73 -0.8 2,926,472 + ECD_02781 0.73 -1.1 2,926,472 + ECD_02781 0.73 -0.3 2,926,473 - ECD_02781 0.73 -1.1 2,926,473 - ECD_02781 0.73 -2.3 2,926,476 + ECD_02781 0.74 -0.9 2,926,476 + ECD_02781 0.74 -0.4 2,926,476 + ECD_02781 0.74 +0.4 2,926,476 + ECD_02781 0.74 -0.6 2,926,476 + ECD_02781 0.74 -0.5 2,926,476 + ECD_02781 0.74 -1.2 2,926,477 - ECD_02781 0.74 -2.1 2,926,509 + ECD_02781 0.78 -0.5 2,926,600 + +0.1 2,926,722 + -1.0 2,926,885 + ECD_02782 0.37 -2.7 2,927,286 + ECD_02783 0.15 -0.8 2,927,286 + ECD_02783 0.15 -0.9 2,927,287 - ECD_02783 0.16 -3.0 2,927,288 + ECD_02783 0.16 +0.4 2,927,315 + ECD_02783 0.25 +0.9 2,927,315 + ECD_02783 0.25 -0.5 2,927,316 - ECD_02783 0.26 -1.7 2,927,326 + ECD_02783 0.29 +1.0 2,927,326 + ECD_02783 0.29 +0.0 2,927,525 + -0.7 2,927,525 + -0.3 2,927,529 + +0.4 2,927,529 + -0.6 2,927,533 + +0.3 2,927,533 + +0.5 2,927,538 + +0.0 2,927,538 + -0.9
Or see this region's nucleotide sequence