Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02357 and ECD_02358 are separated by 125 nucleotides ECD_02358 and ECD_02359 are separated by 67 nucleotides
ECD_02357: ECD_02357 - DUF1176 family protein, at 2,446,223 to 2,447,266
_02357
ECD_02358: ECD_02358 - GDP-mannose pyrophosphatase, at 2,447,392 to 2,447,967
_02358
ECD_02359: ECD_02359 - putative oxidoreductase, FeS binding subunit/NAD/FAD-binding subunit, at 2,448,035 to 2,450,014
_02359
Position (kb)
2447
2448 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2446.485 kb on - strand, within ECD_02357 at 2446.550 kb on - strand, within ECD_02357 at 2446.550 kb on - strand, within ECD_02357 at 2446.814 kb on - strand, within ECD_02357 at 2446.833 kb on - strand, within ECD_02357 at 2446.938 kb on - strand, within ECD_02357 at 2446.938 kb on - strand, within ECD_02357 at 2446.940 kb on + strand, within ECD_02357 at 2446.941 kb on - strand, within ECD_02357 at 2446.941 kb on - strand, within ECD_02357 at 2446.994 kb on + strand, within ECD_02357 at 2447.060 kb on - strand, within ECD_02357 at 2447.063 kb on + strand, within ECD_02357 at 2447.119 kb on + strand, within ECD_02357 at 2447.120 kb on - strand, within ECD_02357 at 2447.120 kb on - strand, within ECD_02357 at 2447.161 kb on + strand, within ECD_02357 at 2447.161 kb on + strand, within ECD_02357 at 2447.162 kb on - strand at 2447.378 kb on - strand at 2447.562 kb on - strand, within ECD_02358 at 2447.610 kb on + strand, within ECD_02358 at 2447.611 kb on - strand, within ECD_02358 at 2447.612 kb on + strand, within ECD_02358 at 2447.613 kb on - strand, within ECD_02358 at 2447.613 kb on - strand, within ECD_02358 at 2447.613 kb on - strand, within ECD_02358 at 2447.613 kb on - strand, within ECD_02358 at 2447.810 kb on + strand, within ECD_02358 at 2447.844 kb on - strand, within ECD_02358 at 2447.856 kb on + strand, within ECD_02358 at 2447.898 kb on + strand, within ECD_02358 at 2447.898 kb on + strand, within ECD_02358 at 2447.899 kb on - strand, within ECD_02358 at 2447.899 kb on - strand, within ECD_02358 at 2447.899 kb on - strand, within ECD_02358 at 2447.899 kb on - strand, within ECD_02358 at 2447.899 kb on - strand, within ECD_02358 at 2447.918 kb on + strand at 2447.997 kb on - strand at 2448.033 kb on + strand at 2448.596 kb on + strand, within ECD_02359 at 2448.699 kb on + strand, within ECD_02359 at 2448.699 kb on + strand, within ECD_02359 at 2448.747 kb on + strand, within ECD_02359 at 2448.748 kb on - strand, within ECD_02359 at 2448.748 kb on - strand, within ECD_02359 at 2448.777 kb on + strand, within ECD_02359 at 2448.778 kb on - strand, within ECD_02359 at 2448.778 kb on - strand, within ECD_02359 at 2448.948 kb on + strand, within ECD_02359
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,446,485 - ECD_02357 0.25 -0.5 2,446,550 - ECD_02357 0.31 -0.3 2,446,550 - ECD_02357 0.31 +0.3 2,446,814 - ECD_02357 0.57 +0.7 2,446,833 - ECD_02357 0.58 -0.6 2,446,938 - ECD_02357 0.68 -1.2 2,446,938 - ECD_02357 0.68 -0.2 2,446,940 + ECD_02357 0.69 -0.4 2,446,941 - ECD_02357 0.69 -0.4 2,446,941 - ECD_02357 0.69 -1.7 2,446,994 + ECD_02357 0.74 +0.7 2,447,060 - ECD_02357 0.80 +3.2 2,447,063 + ECD_02357 0.80 -0.4 2,447,119 + ECD_02357 0.86 -0.8 2,447,120 - ECD_02357 0.86 -0.3 2,447,120 - ECD_02357 0.86 +0.8 2,447,161 + ECD_02357 0.90 -1.2 2,447,161 + ECD_02357 0.90 -0.4 2,447,162 - -0.6 2,447,378 - +1.1 2,447,562 - ECD_02358 0.30 +0.2 2,447,610 + ECD_02358 0.38 -1.6 2,447,611 - ECD_02358 0.38 -2.6 2,447,612 + ECD_02358 0.38 +0.2 2,447,613 - ECD_02358 0.38 -0.9 2,447,613 - ECD_02358 0.38 -1.9 2,447,613 - ECD_02358 0.38 +0.4 2,447,613 - ECD_02358 0.38 -0.2 2,447,810 + ECD_02358 0.73 -0.8 2,447,844 - ECD_02358 0.78 +0.4 2,447,856 + ECD_02358 0.81 -0.8 2,447,898 + ECD_02358 0.88 -1.0 2,447,898 + ECD_02358 0.88 -0.3 2,447,899 - ECD_02358 0.88 +0.2 2,447,899 - ECD_02358 0.88 +0.0 2,447,899 - ECD_02358 0.88 -0.3 2,447,899 - ECD_02358 0.88 -1.2 2,447,899 - ECD_02358 0.88 -0.5 2,447,918 + +0.5 2,447,997 - -0.6 2,448,033 + +1.1 2,448,596 + ECD_02359 0.28 -1.0 2,448,699 + ECD_02359 0.34 -0.8 2,448,699 + ECD_02359 0.34 -0.8 2,448,747 + ECD_02359 0.36 -1.3 2,448,748 - ECD_02359 0.36 +0.7 2,448,748 - ECD_02359 0.36 +0.2 2,448,777 + ECD_02359 0.37 -0.4 2,448,778 - ECD_02359 0.38 +0.1 2,448,778 - ECD_02359 0.38 +3.0 2,448,948 + ECD_02359 0.46 +1.0
Or see this region's nucleotide sequence