Strain Fitness in Escherichia coli BL21 around ECD_02358

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02357 and ECD_02358 are separated by 125 nucleotidesECD_02358 and ECD_02359 are separated by 67 nucleotides ECD_02357: ECD_02357 - DUF1176 family protein, at 2,446,223 to 2,447,266 _02357 ECD_02358: ECD_02358 - GDP-mannose pyrophosphatase, at 2,447,392 to 2,447,967 _02358 ECD_02359: ECD_02359 - putative oxidoreductase, FeS binding subunit/NAD/FAD-binding subunit, at 2,448,035 to 2,450,014 _02359 Position (kb) 2447 2448Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2446.485 kb on - strand, within ECD_02357at 2446.550 kb on - strand, within ECD_02357at 2446.550 kb on - strand, within ECD_02357at 2446.814 kb on - strand, within ECD_02357at 2446.833 kb on - strand, within ECD_02357at 2446.938 kb on - strand, within ECD_02357at 2446.938 kb on - strand, within ECD_02357at 2446.940 kb on + strand, within ECD_02357at 2446.941 kb on - strand, within ECD_02357at 2446.941 kb on - strand, within ECD_02357at 2446.994 kb on + strand, within ECD_02357at 2447.060 kb on - strand, within ECD_02357at 2447.063 kb on + strand, within ECD_02357at 2447.119 kb on + strand, within ECD_02357at 2447.120 kb on - strand, within ECD_02357at 2447.120 kb on - strand, within ECD_02357at 2447.161 kb on + strand, within ECD_02357at 2447.161 kb on + strand, within ECD_02357at 2447.162 kb on - strandat 2447.378 kb on - strandat 2447.562 kb on - strand, within ECD_02358at 2447.610 kb on + strand, within ECD_02358at 2447.611 kb on - strand, within ECD_02358at 2447.612 kb on + strand, within ECD_02358at 2447.613 kb on - strand, within ECD_02358at 2447.613 kb on - strand, within ECD_02358at 2447.613 kb on - strand, within ECD_02358at 2447.613 kb on - strand, within ECD_02358at 2447.810 kb on + strand, within ECD_02358at 2447.844 kb on - strand, within ECD_02358at 2447.856 kb on + strand, within ECD_02358at 2447.898 kb on + strand, within ECD_02358at 2447.898 kb on + strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.899 kb on - strand, within ECD_02358at 2447.918 kb on + strandat 2447.997 kb on - strandat 2448.033 kb on + strandat 2448.596 kb on + strand, within ECD_02359at 2448.699 kb on + strand, within ECD_02359at 2448.699 kb on + strand, within ECD_02359at 2448.747 kb on + strand, within ECD_02359at 2448.748 kb on - strand, within ECD_02359at 2448.748 kb on - strand, within ECD_02359at 2448.777 kb on + strand, within ECD_02359at 2448.778 kb on - strand, within ECD_02359at 2448.778 kb on - strand, within ECD_02359at 2448.948 kb on + strand, within ECD_02359

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,446,485 - ECD_02357 0.25 -0.5
2,446,550 - ECD_02357 0.31 -0.3
2,446,550 - ECD_02357 0.31 +0.3
2,446,814 - ECD_02357 0.57 +0.7
2,446,833 - ECD_02357 0.58 -0.6
2,446,938 - ECD_02357 0.68 -1.2
2,446,938 - ECD_02357 0.68 -0.2
2,446,940 + ECD_02357 0.69 -0.4
2,446,941 - ECD_02357 0.69 -0.4
2,446,941 - ECD_02357 0.69 -1.7
2,446,994 + ECD_02357 0.74 +0.7
2,447,060 - ECD_02357 0.80 +3.2
2,447,063 + ECD_02357 0.80 -0.4
2,447,119 + ECD_02357 0.86 -0.8
2,447,120 - ECD_02357 0.86 -0.3
2,447,120 - ECD_02357 0.86 +0.8
2,447,161 + ECD_02357 0.90 -1.2
2,447,161 + ECD_02357 0.90 -0.4
2,447,162 - -0.6
2,447,378 - +1.1
2,447,562 - ECD_02358 0.30 +0.2
2,447,610 + ECD_02358 0.38 -1.6
2,447,611 - ECD_02358 0.38 -2.6
2,447,612 + ECD_02358 0.38 +0.2
2,447,613 - ECD_02358 0.38 -0.9
2,447,613 - ECD_02358 0.38 -1.9
2,447,613 - ECD_02358 0.38 +0.4
2,447,613 - ECD_02358 0.38 -0.2
2,447,810 + ECD_02358 0.73 -0.8
2,447,844 - ECD_02358 0.78 +0.4
2,447,856 + ECD_02358 0.81 -0.8
2,447,898 + ECD_02358 0.88 -1.0
2,447,898 + ECD_02358 0.88 -0.3
2,447,899 - ECD_02358 0.88 +0.2
2,447,899 - ECD_02358 0.88 +0.0
2,447,899 - ECD_02358 0.88 -0.3
2,447,899 - ECD_02358 0.88 -1.2
2,447,899 - ECD_02358 0.88 -0.5
2,447,918 + +0.5
2,447,997 - -0.6
2,448,033 + +1.1
2,448,596 + ECD_02359 0.28 -1.0
2,448,699 + ECD_02359 0.34 -0.8
2,448,699 + ECD_02359 0.34 -0.8
2,448,747 + ECD_02359 0.36 -1.3
2,448,748 - ECD_02359 0.36 +0.7
2,448,748 - ECD_02359 0.36 +0.2
2,448,777 + ECD_02359 0.37 -0.4
2,448,778 - ECD_02359 0.38 +0.1
2,448,778 - ECD_02359 0.38 +3.0
2,448,948 + ECD_02359 0.46 +1.0

Or see this region's nucleotide sequence