Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02343 and ECD_02344 are separated by 316 nucleotides ECD_02344 and ECD_02345 overlap by 11 nucleotides ECD_02345 and ECD_02346 are separated by 10 nucleotides
ECD_02343: ECD_02343 - ethanolamine transporter, at 2,431,271 to 2,432,497
_02343
ECD_02344: ECD_02344 - ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, at 2,432,814 to 2,434,001
_02344
ECD_02345: ECD_02345 - ethanolamine utilization protein, HSP70/actin superfamily protein, at 2,433,991 to 2,434,827
_02345
ECD_02346: ECD_02346 - aldehyde oxidoreductase, ethanolamine utilization protein, at 2,434,838 to 2,436,241
_02346
Position (kb)
2432
2433
2434
2435 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2431.889 kb on - strand, within ECD_02343 at 2431.966 kb on - strand, within ECD_02343 at 2432.378 kb on - strand at 2432.447 kb on + strand at 2432.456 kb on - strand at 2432.472 kb on + strand at 2432.473 kb on - strand at 2432.489 kb on - strand at 2432.514 kb on + strand at 2432.515 kb on - strand at 2432.676 kb on + strand at 2432.760 kb on + strand at 2432.760 kb on + strand at 2432.955 kb on - strand, within ECD_02344 at 2433.021 kb on - strand, within ECD_02344 at 2433.126 kb on - strand, within ECD_02344 at 2433.217 kb on - strand, within ECD_02344 at 2433.340 kb on + strand, within ECD_02344 at 2433.340 kb on + strand, within ECD_02344 at 2433.340 kb on + strand, within ECD_02344 at 2433.341 kb on - strand, within ECD_02344 at 2433.492 kb on - strand, within ECD_02344 at 2433.501 kb on + strand, within ECD_02344 at 2434.003 kb on + strand at 2434.003 kb on + strand at 2434.004 kb on - strand at 2434.004 kb on - strand at 2434.054 kb on - strand at 2434.073 kb on - strand at 2434.259 kb on + strand, within ECD_02345 at 2434.507 kb on - strand, within ECD_02345 at 2434.865 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,431,889 - ECD_02343 0.50 -1.8 2,431,966 - ECD_02343 0.57 -2.3 2,432,378 - +2.0 2,432,447 + -1.9 2,432,456 - +0.2 2,432,472 + -2.3 2,432,473 - -0.6 2,432,489 - -1.2 2,432,514 + +0.0 2,432,515 - +1.0 2,432,676 + -0.6 2,432,760 + +1.7 2,432,760 + +1.9 2,432,955 - ECD_02344 0.12 -0.8 2,433,021 - ECD_02344 0.17 +0.2 2,433,126 - ECD_02344 0.26 +0.2 2,433,217 - ECD_02344 0.34 +0.6 2,433,340 + ECD_02344 0.44 -0.8 2,433,340 + ECD_02344 0.44 +0.3 2,433,340 + ECD_02344 0.44 +0.6 2,433,341 - ECD_02344 0.44 +0.2 2,433,492 - ECD_02344 0.57 -0.2 2,433,501 + ECD_02344 0.58 -0.9 2,434,003 + +0.1 2,434,003 + -1.7 2,434,004 - -0.2 2,434,004 - +0.7 2,434,054 - +0.2 2,434,073 - -0.3 2,434,259 + ECD_02345 0.32 -1.7 2,434,507 - ECD_02345 0.62 -0.1 2,434,865 + +0.7
Or see this region's nucleotide sequence