Strain Fitness in Escherichia coli BL21 around ECD_02343

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02342 and ECD_02343 overlap by 4 nucleotidesECD_02343 and ECD_02344 are separated by 316 nucleotides ECD_02342: ECD_02342 - reactivating factor for ethanolamine ammonia lyase, at 2,429,871 to 2,431,274 _02342 ECD_02343: ECD_02343 - ethanolamine transporter, at 2,431,271 to 2,432,497 _02343 ECD_02344: ECD_02344 - ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase, at 2,432,814 to 2,434,001 _02344 Position (kb) 2431 2432 2433Strain fitness (log2 ratio) -2 -1 0 1 2at 2430.279 kb on + strand, within ECD_02342at 2430.280 kb on - strand, within ECD_02342at 2430.372 kb on + strand, within ECD_02342at 2430.373 kb on - strand, within ECD_02342at 2430.373 kb on - strand, within ECD_02342at 2430.373 kb on - strand, within ECD_02342at 2430.469 kb on + strand, within ECD_02342at 2430.796 kb on + strand, within ECD_02342at 2430.796 kb on + strand, within ECD_02342at 2431.087 kb on - strand, within ECD_02342at 2431.137 kb on - strandat 2431.257 kb on + strandat 2431.297 kb on + strandat 2431.352 kb on + strandat 2431.421 kb on + strand, within ECD_02343at 2431.421 kb on + strand, within ECD_02343at 2431.421 kb on + strand, within ECD_02343at 2431.422 kb on - strand, within ECD_02343at 2431.422 kb on - strand, within ECD_02343at 2431.661 kb on - strand, within ECD_02343at 2431.724 kb on - strand, within ECD_02343at 2431.889 kb on - strand, within ECD_02343at 2431.966 kb on - strand, within ECD_02343at 2432.378 kb on - strandat 2432.447 kb on + strandat 2432.456 kb on - strandat 2432.472 kb on + strandat 2432.473 kb on - strandat 2432.489 kb on - strandat 2432.514 kb on + strandat 2432.515 kb on - strandat 2432.676 kb on + strandat 2432.760 kb on + strandat 2432.760 kb on + strandat 2432.955 kb on - strand, within ECD_02344at 2433.021 kb on - strand, within ECD_02344at 2433.126 kb on - strand, within ECD_02344at 2433.217 kb on - strand, within ECD_02344at 2433.340 kb on + strand, within ECD_02344at 2433.340 kb on + strand, within ECD_02344at 2433.340 kb on + strand, within ECD_02344at 2433.341 kb on - strand, within ECD_02344at 2433.492 kb on - strand, within ECD_02344

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
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2,430,279 + ECD_02342 0.29 -0.7
2,430,280 - ECD_02342 0.29 -0.6
2,430,372 + ECD_02342 0.36 -2.1
2,430,373 - ECD_02342 0.36 -0.1
2,430,373 - ECD_02342 0.36 -1.1
2,430,373 - ECD_02342 0.36 -0.3
2,430,469 + ECD_02342 0.43 -1.4
2,430,796 + ECD_02342 0.66 -0.7
2,430,796 + ECD_02342 0.66 +1.1
2,431,087 - ECD_02342 0.87 -0.3
2,431,137 - -0.6
2,431,257 + -1.0
2,431,297 + -2.2
2,431,352 + +0.4
2,431,421 + ECD_02343 0.12 -0.9
2,431,421 + ECD_02343 0.12 -0.0
2,431,421 + ECD_02343 0.12 -0.4
2,431,422 - ECD_02343 0.12 -1.2
2,431,422 - ECD_02343 0.12 +0.6
2,431,661 - ECD_02343 0.32 +0.0
2,431,724 - ECD_02343 0.37 -0.1
2,431,889 - ECD_02343 0.50 -1.8
2,431,966 - ECD_02343 0.57 -2.3
2,432,378 - +2.0
2,432,447 + -1.9
2,432,456 - +0.2
2,432,472 + -2.3
2,432,473 - -0.6
2,432,489 - -1.2
2,432,514 + +0.0
2,432,515 - +1.0
2,432,676 + -0.6
2,432,760 + +1.7
2,432,760 + +1.9
2,432,955 - ECD_02344 0.12 -0.8
2,433,021 - ECD_02344 0.17 +0.2
2,433,126 - ECD_02344 0.26 +0.2
2,433,217 - ECD_02344 0.34 +0.6
2,433,340 + ECD_02344 0.44 -0.8
2,433,340 + ECD_02344 0.44 +0.3
2,433,340 + ECD_02344 0.44 +0.6
2,433,341 - ECD_02344 0.44 +0.2
2,433,492 - ECD_02344 0.57 -0.2

Or see this region's nucleotide sequence