Strain Fitness in Escherichia coli BL21 around ECD_02236

Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02235 and ECD_02236 are separated by 265 nucleotidesECD_02236 and ECD_02237 are separated by 94 nucleotides ECD_02235: ECD_02235 - lysine/arginine/ornithine transporter subunit, at 2,314,262 to 2,315,044 _02235 ECD_02236: ECD_02236 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 2,315,310 to 2,315,879 _02236 ECD_02237: ECD_02237 - amidophosphoribosyltransferase, at 2,315,974 to 2,317,491 _02237 Position (kb) 2315 2316Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2314.379 kb on - strand, within ECD_02235at 2314.411 kb on - strand, within ECD_02235at 2314.502 kb on + strand, within ECD_02235at 2314.503 kb on - strand, within ECD_02235at 2314.540 kb on - strand, within ECD_02235at 2314.561 kb on - strand, within ECD_02235at 2314.606 kb on - strand, within ECD_02235at 2314.844 kb on - strand, within ECD_02235at 2314.912 kb on + strand, within ECD_02235at 2314.938 kb on + strand, within ECD_02235at 2314.938 kb on + strand, within ECD_02235at 2314.938 kb on + strand, within ECD_02235at 2314.958 kb on - strand, within ECD_02235at 2314.958 kb on - strand, within ECD_02235at 2314.962 kb on - strand, within ECD_02235at 2314.984 kb on - strandat 2315.049 kb on - strandat 2315.049 kb on - strandat 2315.083 kb on + strandat 2315.122 kb on + strandat 2315.312 kb on - strandat 2315.880 kb on - strandat 2315.884 kb on - strandat 2316.042 kb on + strandat 2316.043 kb on - strandat 2316.047 kb on - strandat 2316.051 kb on + strandat 2316.276 kb on - strand, within ECD_02237at 2316.318 kb on - strand, within ECD_02237at 2316.460 kb on - strand, within ECD_02237at 2316.546 kb on + strand, within ECD_02237at 2316.716 kb on + strand, within ECD_02237at 2316.717 kb on - strand, within ECD_02237at 2316.717 kb on - strand, within ECD_02237at 2316.717 kb on - strand, within ECD_02237at 2316.718 kb on + strand, within ECD_02237at 2316.718 kb on + strand, within ECD_02237at 2316.722 kb on + strand, within ECD_02237at 2316.798 kb on - strand, within ECD_02237at 2316.878 kb on + strand, within ECD_02237at 2316.878 kb on + strand, within ECD_02237at 2316.879 kb on - strand, within ECD_02237at 2316.879 kb on - strand, within ECD_02237at 2316.879 kb on - strand, within ECD_02237at 2316.879 kb on - strand, within ECD_02237

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10
remove
2,314,379 - ECD_02235 0.15 +0.8
2,314,411 - ECD_02235 0.19 -0.5
2,314,502 + ECD_02235 0.31 +0.1
2,314,503 - ECD_02235 0.31 -1.1
2,314,540 - ECD_02235 0.36 -0.3
2,314,561 - ECD_02235 0.38 -0.4
2,314,606 - ECD_02235 0.44 -0.8
2,314,844 - ECD_02235 0.74 -1.1
2,314,912 + ECD_02235 0.83 -0.8
2,314,938 + ECD_02235 0.86 -0.4
2,314,938 + ECD_02235 0.86 -2.6
2,314,938 + ECD_02235 0.86 -0.8
2,314,958 - ECD_02235 0.89 -1.7
2,314,958 - ECD_02235 0.89 -1.1
2,314,962 - ECD_02235 0.89 -0.4
2,314,984 - +0.2
2,315,049 - +0.2
2,315,049 - -1.2
2,315,083 + -1.2
2,315,122 + -1.7
2,315,312 - -1.2
2,315,880 - -0.6
2,315,884 - -0.2
2,316,042 + -0.4
2,316,043 - -2.2
2,316,047 - -2.0
2,316,051 + -3.0
2,316,276 - ECD_02237 0.20 -1.0
2,316,318 - ECD_02237 0.23 -2.2
2,316,460 - ECD_02237 0.32 -2.0
2,316,546 + ECD_02237 0.38 +0.2
2,316,716 + ECD_02237 0.49 -1.4
2,316,717 - ECD_02237 0.49 -0.4
2,316,717 - ECD_02237 0.49 -2.6
2,316,717 - ECD_02237 0.49 -1.8
2,316,718 + ECD_02237 0.49 -0.2
2,316,718 + ECD_02237 0.49 -1.0
2,316,722 + ECD_02237 0.49 -1.1
2,316,798 - ECD_02237 0.54 -2.5
2,316,878 + ECD_02237 0.60 -1.3
2,316,878 + ECD_02237 0.60 -0.8
2,316,879 - ECD_02237 0.60 -0.5
2,316,879 - ECD_02237 0.60 -2.0
2,316,879 - ECD_02237 0.60 +2.8
2,316,879 - ECD_02237 0.60 -0.1

Or see this region's nucleotide sequence