Experiment: Mixed culture, Bdellovibrio bacteriovorus HD100_10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02235 and ECD_02236 are separated by 265 nucleotides ECD_02236 and ECD_02237 are separated by 94 nucleotides
ECD_02235: ECD_02235 - lysine/arginine/ornithine transporter subunit, at 2,314,262 to 2,315,044
_02235
ECD_02236: ECD_02236 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 2,315,310 to 2,315,879
_02236
ECD_02237: ECD_02237 - amidophosphoribosyltransferase, at 2,315,974 to 2,317,491
_02237
Position (kb)
2315
2316 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2314.379 kb on - strand, within ECD_02235 at 2314.411 kb on - strand, within ECD_02235 at 2314.502 kb on + strand, within ECD_02235 at 2314.503 kb on - strand, within ECD_02235 at 2314.540 kb on - strand, within ECD_02235 at 2314.561 kb on - strand, within ECD_02235 at 2314.606 kb on - strand, within ECD_02235 at 2314.844 kb on - strand, within ECD_02235 at 2314.912 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.938 kb on + strand, within ECD_02235 at 2314.958 kb on - strand, within ECD_02235 at 2314.958 kb on - strand, within ECD_02235 at 2314.962 kb on - strand, within ECD_02235 at 2314.984 kb on - strand at 2315.049 kb on - strand at 2315.049 kb on - strand at 2315.083 kb on + strand at 2315.122 kb on + strand at 2315.312 kb on - strand at 2315.880 kb on - strand at 2315.884 kb on - strand at 2316.042 kb on + strand at 2316.043 kb on - strand at 2316.047 kb on - strand at 2316.051 kb on + strand at 2316.276 kb on - strand, within ECD_02237 at 2316.318 kb on - strand, within ECD_02237 at 2316.460 kb on - strand, within ECD_02237 at 2316.546 kb on + strand, within ECD_02237 at 2316.716 kb on + strand, within ECD_02237 at 2316.717 kb on - strand, within ECD_02237 at 2316.717 kb on - strand, within ECD_02237 at 2316.717 kb on - strand, within ECD_02237 at 2316.718 kb on + strand, within ECD_02237 at 2316.718 kb on + strand, within ECD_02237 at 2316.722 kb on + strand, within ECD_02237 at 2316.798 kb on - strand, within ECD_02237 at 2316.878 kb on + strand, within ECD_02237 at 2316.878 kb on + strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237 at 2316.879 kb on - strand, within ECD_02237
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Bdellovibrio bacteriovorus HD100_10 remove 2,314,379 - ECD_02235 0.15 +0.8 2,314,411 - ECD_02235 0.19 -0.5 2,314,502 + ECD_02235 0.31 +0.1 2,314,503 - ECD_02235 0.31 -1.1 2,314,540 - ECD_02235 0.36 -0.3 2,314,561 - ECD_02235 0.38 -0.4 2,314,606 - ECD_02235 0.44 -0.8 2,314,844 - ECD_02235 0.74 -1.1 2,314,912 + ECD_02235 0.83 -0.8 2,314,938 + ECD_02235 0.86 -0.4 2,314,938 + ECD_02235 0.86 -2.6 2,314,938 + ECD_02235 0.86 -0.8 2,314,958 - ECD_02235 0.89 -1.7 2,314,958 - ECD_02235 0.89 -1.1 2,314,962 - ECD_02235 0.89 -0.4 2,314,984 - +0.2 2,315,049 - +0.2 2,315,049 - -1.2 2,315,083 + -1.2 2,315,122 + -1.7 2,315,312 - -1.2 2,315,880 - -0.6 2,315,884 - -0.2 2,316,042 + -0.4 2,316,043 - -2.2 2,316,047 - -2.0 2,316,051 + -3.0 2,316,276 - ECD_02237 0.20 -1.0 2,316,318 - ECD_02237 0.23 -2.2 2,316,460 - ECD_02237 0.32 -2.0 2,316,546 + ECD_02237 0.38 +0.2 2,316,716 + ECD_02237 0.49 -1.4 2,316,717 - ECD_02237 0.49 -0.4 2,316,717 - ECD_02237 0.49 -2.6 2,316,717 - ECD_02237 0.49 -1.8 2,316,718 + ECD_02237 0.49 -0.2 2,316,718 + ECD_02237 0.49 -1.0 2,316,722 + ECD_02237 0.49 -1.1 2,316,798 - ECD_02237 0.54 -2.5 2,316,878 + ECD_02237 0.60 -1.3 2,316,878 + ECD_02237 0.60 -0.8 2,316,879 - ECD_02237 0.60 -0.5 2,316,879 - ECD_02237 0.60 -2.0 2,316,879 - ECD_02237 0.60 +2.8 2,316,879 - ECD_02237 0.60 -0.1
Or see this region's nucleotide sequence